2rfl: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2rfl.jpg|left|200px]]<br /><applet load="2rfl" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2rfl, resolution 2.35&Aring;" />
-'''Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens'''<br />
-==About this Structure==
+==Crystal structure of the putative phosphohistidine phosphatase SixA from Agrobacterium tumefaciens==
-RFL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58] with <scene name='pdbligand=SCN:'>SCN</scene>, <scene name='pdbligand=GOL:'>GOL</scene> and <scene name='pdbligand=ACY:'>ACY</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFL OCA].
+<StructureSection load='2rfl' size='340' side='right'caption='[[2rfl]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-[[Category: Agrobacterium tumefaciens str. c58]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2rfl]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RFL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RFL FirstGlance]. <br>
-[[Category: Binkowski, T.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-[[Category: Edwards, A.M.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rfl OCA], [https://pdbe.org/2rfl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rfl RCSB], [https://www.ebi.ac.uk/pdbsum/2rfl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rfl ProSAT], [https://www.topsan.org/Proteins/MCSG/2rfl TOPSAN]</span></td></tr>
-[[Category: Kim, Y.]]
+</table>
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+== Function ==
-[[Category: Savchenko, A.]]
+[https://www.uniprot.org/uniprot/A9CJ67_AGRFC A9CJ67_AGRFC]
-[[Category: Xu, X.]]
+== Evolutionary Conservation ==
-[[Category: ACY]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: GOL]]
+Check<jmol>
-[[Category: SCN]]
+  <jmolCheckbox>
-[[Category: alpha-beta-alpha sandwich]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/2rfl_consurf.spt"</scriptWhenChecked>
-[[Category: hydrolase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: isomerase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: mcsg]]
+  </jmolCheckbox>
-[[Category: midwest center for structural genomics]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rfl ConSurf].
-[[Category: protein structure initiative]]
+<div style="clear:both"></div>
-[[Category: psi-2]]
+__TOC__
-[[Category: structural genomics]]
+</StructureSection>
+[[Category: Agrobacterium fabrum str. C58]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:45:23 2008''
+[[Category: Large Structures]]
+[[Category: Binkowski T]]
+[[Category: Edwards AM]]
+[[Category: Joachimiak A]]
+[[Category: Kim Y]]
+[[Category: Savchenko A]]
+[[Category: Xu X]]