3b33: Difference between revisions

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-[[Image:3b33.gif|left|200px]]
-<!--
+==Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus==
-The line below this paragraph, containing "STRUCTURE_3b33", creates the "Structure Box" on the page.
+<StructureSection load='3b33' size='340' side='right'caption='[[3b33]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3b33]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B33 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3b33|  PDB=3b33  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b33 OCA], [https://pdbe.org/3b33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b33 RCSB], [https://www.ebi.ac.uk/pdbsum/3b33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b33 ProSAT], [https://www.topsan.org/Proteins/MCSG/3b33 TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q87TF0_VIBPA Q87TF0_VIBPA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-B33 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B33 OCA].
+Check<jmol>
-[[Category: Histidine kinase]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/3b33_consurf.spt"</scriptWhenChecked>
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Abdullah, J.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Joachimiak, A.]]
+  </jmolCheckbox>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b33 ConSurf].
-[[Category: Osipiuk, J.]]
+<div style="clear:both"></div>
-[[Category: Sather, A.]]
+__TOC__
-[[Category: Apc91440 4]]
+</StructureSection>
-[[Category: Kinase]]
+[[Category: Large Structures]]
-[[Category: Mcsg]]
+[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-[[Category: Midwest center for structural genomic]]
+[[Category: Abdullah J]]
-[[Category: Nitrogen regulation protein]]
+[[Category: Joachimiak A]]
-[[Category: Pas domain]]
+[[Category: Osipiuk J]]
-[[Category: Phosphorylation]]
+[[Category: Sather A]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 20:20:52 2008''