3b33: Difference between revisions

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-[[Image:3b33.gif|left|200px]]
- {{Structure
+==Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus==
-|PDB= 3b33 |SIZE=350|CAPTION= <scene name='initialview01'>3b33</scene>, resolution 1.830&Aring;
+<StructureSection load='3b33' size='340' side='right'caption='[[3b33]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+<table><tr><td colspan='2'>[[3b33]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B33 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-|GENE= VP0119 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00130 PAS], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00091 PAS]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b33 OCA], [https://pdbe.org/3b33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b33 RCSB], [https://www.ebi.ac.uk/pdbsum/3b33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b33 ProSAT], [https://www.topsan.org/Proteins/MCSG/3b33 TOPSAN]</span></td></tr>
-|RELATEDENTRY=
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b33 OCA], [http://www.ebi.ac.uk/pdbsum/3b33 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3b33 RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q87TF0_VIBPA Q87TF0_VIBPA]
+== Evolutionary Conservation ==
-'''Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus'''
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/3b33_consurf.spt"</scriptWhenChecked>
-B33 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B33 OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Histidine kinase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Single protein]]
+  </jmolCheckbox>
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b33 ConSurf].
-[[Category: Abdullah, J.]]
+<div style="clear:both"></div>
-[[Category: Joachimiak, A.]]
+__TOC__
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</StructureSection>
-[[Category: Osipiuk, J.]]
+[[Category: Large Structures]]
-[[Category: Sather, A.]]
+[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-[[Category: apc91440 4]]
+[[Category: Abdullah J]]
-[[Category: kinase]]
+[[Category: Joachimiak A]]
-[[Category: mcsg]]
+[[Category: Osipiuk J]]
-[[Category: midwest center for structural genomic]]
+[[Category: Sather A]]
-[[Category: nitrogen regulation protein]]
-[[Category: pas domain]]
-[[Category: phosphorylation]]
-[[Category: protein structure initiative]]
-[[Category: psi-2]]
-[[Category: structural genomic]]
-[[Category: transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:22:39 2008''