2yzg: Difference between revisions

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-[[Image:2yzg.jpg|left|200px]]
- {{Structure
+==Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8==
-|PDB= 2yzg |SIZE=350|CAPTION= <scene name='initialview01'>2yzg</scene>, resolution 2.30&Aring;
+<StructureSection load='2yzg' size='340' side='right'caption='[[2yzg]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[2yzg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZG FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzg OCA], [https://pdbe.org/2yzg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzg RCSB], [https://www.ebi.ac.uk/pdbsum/2yzg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzg ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzg TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DDL_THET8 DDL_THET8] Cell wall formation.[HAMAP-Rule:MF_00047]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzg_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzg ConSurf].
+<div style="clear:both"></div>
-'''Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8'''
+==See Also==
+*[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-YZG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZG OCA].
+[[Category: Large Structures]]
-[[Category: D-alanine--D-alanine ligase]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Single protein]]
+[[Category: Kitamura Y]]
-[[Category: Thermus thermophilus]]
+[[Category: Kuramitsu S]]
-[[Category: Kitamura, Y.]]
+[[Category: Yokoyama S]]
-[[Category: Kuramitsu, S.]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
-[[Category: Yokoyama, S.]]
-[[Category: cell shape]]
-[[Category: d-alanine:d-alanine ligase]]
-[[Category: national project on protein structural and functional analyse]]
-[[Category: nppsfa]]
-[[Category: peptidoglycan synthesis]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:50:32 2008''