2va9: Difference between revisions

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-[[Image:2va9.gif|left|200px]]
-<!--
+==Structure of native TcAChE after a 9 seconds annealing to room temperature during the first 5 seconds of which laser irradiation at 266nm took place==
-The line below this paragraph, containing "STRUCTURE_2va9", creates the "Structure Box" on the page.
+<StructureSection load='2va9' size='340' side='right'caption='[[2va9]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2va9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tetronarce_californica Tetronarce californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VA9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VA9 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-{{STRUCTURE_2va9|  PDB=2va9  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2va9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2va9 OCA], [https://pdbe.org/2va9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2va9 RCSB], [https://www.ebi.ac.uk/pdbsum/2va9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2va9 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ACES_TETCF ACES_TETCF] Terminates signal transduction at the neuromuscular junction by rapid hydrolysis of the acetylcholine released into the synaptic cleft. May be involved in cell-cell interactions.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/2va9_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2va9 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Acetylcholinesterase plays a crucial role in nerve-impulse transmission at cholinergic synapses. The apparent paradox that it displays high turnover despite its active site being buried raises cogent questions as to how the traffic of substrates and products to and from the active site can occur so rapidly in such circumstances. Here, a kinetic crystallography strategy aimed at structurally addressing the issue of product traffic in acetylcholinesterase is presented, in which UV-laser-induced cleavage of a photolabile precursor of the enzymatic product analogue arsenocholine, 'caged' arsenocholine, is performed in a temperature-controlled X-ray crystallography regime. The 'caged' arsenocholine was shown to bind at both the active and peripheral sites of acetylcholinesterase. UV irradiation of a complex with acetylcholinesterase during a brief temperature excursion from 100 K to room temperature is most likely to have resulted in a decrease in occupancy by the caged compound. Microspectrophotometric experiments showed that the caged compound had indeed been photocleaved. It is proposed that a fraction of the arsenocholine molecules released within the crystal had been expelled from both the active and the peripheral sites. Partial q-weighted difference refinement revealed a relative movement of the two domains in acetylcholinesterase after photolysis and the room-temperature excursion, resulting in an increase in the active-site gorge volume of 30% and 35% in monomers A and B of the asymmetric unit, respectively. Moreover, an alternative route to the active-site gorge of the enzyme appeared to open. This structural characterization of acetylcholinesterase 'at work' is consistent with the idea that choline exits from the enzyme after catalysis either via the gorge or via an alternative 'backdoor' trajectory.
-'''STRUCTURE OF NATIVE TCACHE AFTER A 9 SECONDS ANNEALING TO ROOM TEMPERATURE DURING THE FIRST 5 SECONDS OF WHICH LASER IRRADIATION AT 266NM TOOK PLACE'''
+Use of a 'caged' analogue to study the traffic of choline within acetylcholinesterase by kinetic crystallography.,Colletier JP, Royant A, Specht A, Sanson B, Nachon F, Masson P, Zaccai G, Sussman JL, Goeldner M, Silman I, Bourgeois D, Weik M Acta Crystallogr D Biol Crystallogr. 2007 Nov;63(Pt 11):1115-28. Epub 2007, Oct 17. PMID:18007027<ref>PMID:18007027</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2va9" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-VA9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Torpedo_californica Torpedo californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VA9 OCA].
+*[[Acetylcholinesterase 3D structures|Acetylcholinesterase 3D structures]]
-[[Category: Acetylcholinesterase]]
+== References ==
-[[Category: Single protein]]
+<references/>
-[[Category: Torpedo californica]]
+__TOC__
-[[Category: Bourgeois, D.]]
+</StructureSection>
-[[Category: Colletier, J P.]]
+[[Category: Large Structures]]
-[[Category: Goeldner, M.]]
+[[Category: Tetronarce californica]]
-[[Category: Masson, P.]]
+[[Category: Bourgeois D]]
-[[Category: Nachon, F.]]
+[[Category: Colletier J-P]]
-[[Category: Royant, A.]]
+[[Category: Goeldner M]]
-[[Category: Sanson, B.]]
+[[Category: Masson P]]
-[[Category: Silman, I.]]
+[[Category: Nachon F]]
-[[Category: Specht, A.]]
+[[Category: Royant A]]
-[[Category: Sussman, J L.]]
+[[Category: Sanson B]]
-[[Category: Weik, M.]]
+[[Category: Silman I]]
-[[Category: Zaccai, G.]]
+[[Category: Specht A]]
-[[Category: Acetylcholinesterase]]
+[[Category: Sussman JL]]
-[[Category: Alternative splicing]]
+[[Category: Weik M]]
-[[Category: Backdoor]]
+[[Category: Zaccai G]]
-[[Category: Caged compound]]
-[[Category: Cell junction]]
-[[Category: Glycoprotein]]
-[[Category: Gpi-anchor]]
-[[Category: Hydrolase]]
-[[Category: Kinetic crystallography]]
-[[Category: Lipoprotein]]
-[[Category: Membrane]]
-[[Category: Neurotransmitter degradation]]
-[[Category: Partial q-weighted difference refinement]]
-[[Category: Serine esterase]]
-[[Category: Synapse]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 18:29:14 2008''