3b3t: Difference between revisions

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OCA

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 ==Crystal structure of the D118N mutant of the aminopeptidase from Vibrio proteolyticus==
-<StructureSection load='3b3t' size='340' side='right' caption='[[3b3t]], [[Resolution|resolution]] 1.17&Aring;' scene=''>
+<StructureSection load='3b3t' size='340' side='right'caption='[[3b3t]], [[Resolution|resolution]] 1.17&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3b3t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aeromonas_proteolytica"_merkel_et_al._1964 "aeromonas proteolytica" merkel et al. 1964]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B3T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B3T FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3b3t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_proteolyticus Vibrio proteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B3T FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ILE:ISOLEUCINE'>ILE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.17&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3b35|3b35]], [[3b3c|3b3c]], [[3b3s|3b3s]], [[3b3v|3b3v]], [[3b3w|3b3w]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ILE:ISOLEUCINE'>ILE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AAP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=671 "Aeromonas proteolytica" Merkel et al. 1964])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b3t OCA], [https://pdbe.org/3b3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b3t RCSB], [https://www.ebi.ac.uk/pdbsum/3b3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b3t ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Bacterial_leucyl_aminopeptidase Bacterial leucyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.10 3.4.11.10] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b3t OCA], [http://pdbe.org/3b3t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3b3t RCSB], [http://www.ebi.ac.uk/pdbsum/3b3t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3b3t ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/AMPX_VIBPR AMPX_VIBPR]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/3b3t_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/3b3t_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 29: / Line 29: @@
 </div>
 <div class="pdbe-citations 3b3t" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Aeromonas proteolytica merkel et al. 1964]]
+[[Category: Large Structures]]
-[[Category: Bacterial leucyl aminopeptidase]]
+[[Category: Vibrio proteolyticus]]
-[[Category: Ataie, N J]]
+[[Category: Ataie NJ]]
-[[Category: Hoang, Q Q]]
+[[Category: Hoang QQ]]
-[[Category: Milne, A]]
+[[Category: Milne A]]
-[[Category: Petsko, G A]]
+[[Category: Petsko GA]]
-[[Category: Ringe, D]]
+[[Category: Ringe D]]
-[[Category: Zahniser, M P.D]]
+[[Category: Zahniser MPD]]
-[[Category: Alpha beta]]
-[[Category: Aminopeptidase]]
-[[Category: Hydrolase]]
-[[Category: Metal-binding]]
-[[Category: Protease]]
-[[Category: Secreted]]
-[[Category: Zinc]]
-[[Category: Zymogen]]