2r8s: Difference between revisions

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OCA

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 ==High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain==
-<StructureSection load='2r8s' size='340' side='right' caption='[[2r8s]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+<StructureSection load='2r8s' size='340' side='right'caption='[[2r8s]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2r8s]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2R8S FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2r8s]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8S FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2r8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2r8s RCSB], [http://www.ebi.ac.uk/pdbsum/2r8s PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8s OCA], [https://pdbe.org/2r8s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8s RCSB], [https://www.ebi.ac.uk/pdbsum/2r8s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8s ProSAT]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
@@ Line 10: / Line 12: @@
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8s_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8s_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8s ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 24: / Line 26: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2r8s" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Antibody|Antibody]]
+*[[Antibody 3D structures|Antibody 3D structures]]
-*[[Group I intron|Group I intron]]
+*[[Ribozyme 3D structures|Ribozyme 3D structures]]
-*[[Ribozyme|Ribozyme]]
+*[[3D structures of non-human antibody|3D structures of non-human antibody]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
-[[Category: Koide, S]]
+[[Category: Koide S]]
-[[Category: Kossiakoff, A A]]
+[[Category: Kossiakoff AA]]
-[[Category: Piccirilli, J A]]
+[[Category: Piccirilli JA]]
-[[Category: Sidhu, S S]]
+[[Category: Sidhu SS]]
-[[Category: Tereshko, V]]
+[[Category: Tereshko V]]
-[[Category: Ye, J D]]
+[[Category: Ye JD]]
-[[Category: Fab-rna complex]]
-[[Category: Immune system-rna complex]]
-[[Category: Protein-rna complex]]