3bjo: Difference between revisions

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 ==Crystal structure of the C-terminal domain of a possible ATP-binding protein from Methanocaldococcus jannaschii DSM 2661==
-<StructureSection load='3bjo' size='340' side='right' caption='[[3bjo]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='3bjo' size='340' side='right'caption='[[3bjo]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3bjo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_dsm_2661 Methanocaldococcus jannaschii dsm 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BJO FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3bjo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BJO FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MJ1010 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 Methanocaldococcus jannaschii DSM 2661])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bjo OCA], [https://pdbe.org/3bjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bjo RCSB], [https://www.ebi.ac.uk/pdbsum/3bjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bjo ProSAT], [https://www.topsan.org/Proteins/MCSG/3bjo TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bjo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bjo RCSB], [http://www.ebi.ac.uk/pdbsum/3bjo PDBsum], [http://www.topsan.org/Proteins/MCSG/3bjo TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Y1010_METJA Y1010_METJA]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bj/3bjo_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bj/3bjo_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bjo ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Methanocaldococcus jannaschii dsm 2661]]
+[[Category: Large Structures]]
-[[Category: Hatzos, C]]
+[[Category: Methanocaldococcus jannaschii DSM 2661]]
-[[Category: Joachimiak, A]]
+[[Category: Hatzos C]]
-[[Category: Structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: Moy, S]]
+[[Category: Moy S]]
-[[Category: Tan, K]]
+[[Category: Tan K]]
-[[Category: Apc87992 1]]
-[[Category: Atp-binding]]
-[[Category: Mcsg]]
-[[Category: Nucleotide binding protein]]
-[[Category: Nucleotide-binding]]
-[[Category: PSI, Protein structure initiative]]