3bom: Difference between revisions

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<StructureSection load='3bom' size='340' side='right'caption='[[3bom]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
<StructureSection load='3bom' size='340' side='right'caption='[[3bom]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3bom]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oncorhynchus_mykiss Oncorhynchus mykiss]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BOM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BOM FirstGlance]. <br>
<table><tr><td colspan='2'>[[3bom]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oncorhynchus_mykiss Oncorhynchus mykiss]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BOM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BOM FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bom OCA], [http://pdbe.org/3bom PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bom RCSB], [http://www.ebi.ac.uk/pdbsum/3bom PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bom ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bom OCA], [https://pdbe.org/3bom PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bom RCSB], [https://www.ebi.ac.uk/pdbsum/3bom PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bom ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/HBA4_ONCMY HBA4_ONCMY]] Involved in oxygen transport from gills to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB4_ONCMY HBB4_ONCMY]] Involved in oxygen transport from gills to the various peripheral tissues.  
[https://www.uniprot.org/uniprot/HBA4_ONCMY HBA4_ONCMY] Involved in oxygen transport from gills to the various peripheral tissues.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bo/3bom_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bo/3bom_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Oncorhynchus mykiss]]
[[Category: Oncorhynchus mykiss]]
[[Category: Bingman, C A]]
[[Category: Aranda IV R]]
[[Category: Bitto, E]]
[[Category: Bingman CA]]
[[Category: Structural genomic]]
[[Category: Bitto E]]
[[Category: IV, R Aranda]]
[[Category: Phillips Jr GN]]
[[Category: Phillips, G N]]
[[Category: Richards M]]
[[Category: Richards, M]]
[[Category: Wesenberg GE]]
[[Category: Wesenberg, G E]]
[[Category: Cesg]]
[[Category: Fish hemoglobin]]
[[Category: Heme]]
[[Category: Iron]]
[[Category: Metal-binding]]
[[Category: Oxygen storage-transport complex]]
[[Category: Oxygen storage/transport]]
[[Category: Oxygen transport]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transport]]

Latest revision as of 11:49, 30 October 2024

Crystal structure of trout hemoglobin at 1.35 Angstrom resolutionCrystal structure of trout hemoglobin at 1.35 Angstrom resolution

Structural highlights

3bom is a 4 chain structure with sequence from Oncorhynchus mykiss. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.35Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HBA4_ONCMY Involved in oxygen transport from gills to the various peripheral tissues.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3bom, resolution 1.35Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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