3bwl: Difference between revisions

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 ==Crystal structure of PAS domain of HTR-like protein from Haloarcula marismortui==
-<StructureSection load='3bwl' size='340' side='right' caption='[[3bwl]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
+<StructureSection load='3bwl' size='340' side='right'caption='[[3bwl]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3bwl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BWL FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3bwl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui_ATCC_43049 Haloarcula marismortui ATCC 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWL FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=I3A:1H-INDOLE-3-CARBALDEHYDE'>I3A</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=I3A:1H-INDOLE-3-CARBALDEHYDE'>I3A</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">htlD, rrnAC0075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 Haloarcula marismortui ATCC 43049])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwl OCA], [https://pdbe.org/3bwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwl RCSB], [https://www.ebi.ac.uk/pdbsum/3bwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwl ProSAT], [https://www.topsan.org/Proteins/MCSG/3bwl TOPSAN]</span></td></tr>
-<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
+</table>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3bwl RCSB], [http://www.ebi.ac.uk/pdbsum/3bwl PDBsum], [http://www.topsan.org/Proteins/MCSG/3bwl TOPSAN]</span></td></tr>
-<table>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwl_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwl_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bwl ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Haloarcula marismortui atcc 43049]]
+[[Category: Haloarcula marismortui ATCC 43049]]
-[[Category: Histidine kinase]]
+[[Category: Large Structures]]
-[[Category: Freeman, L.]]
+[[Category: Freeman L]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Osipiuk J]]
-[[Category: Osipiuk, J.]]
+[[Category: Zhou M]]
-[[Category: Zhou, M.]]
-[[Category: Apc87707 1]]
-[[Category: Htr-like protein]]
-[[Category: Kinase]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Pas domain]]
-[[Category: Phosphoprotein]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]