3bs3: Difference between revisions

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[[Image:3bs3.jpg|left|200px]]


{{Structure
==Crystal structure of a putative DNA-binding protein from Bacteroides fragilis==
|PDB= 3bs3 |SIZE=350|CAPTION= <scene name='initialview01'>3bs3</scene>, resolution 1.650&Aring;
<StructureSection load='3bs3' size='340' side='right'caption='[[3bs3]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[3bs3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BS3 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
|GENE= BF1076 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272559 Bacteroides fragilis NCTC 9343])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bs3 OCA], [https://pdbe.org/3bs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bs3 RCSB], [https://www.ebi.ac.uk/pdbsum/3bs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bs3 ProSAT], [https://www.topsan.org/Proteins/MCSG/3bs3 TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bs3 OCA], [http://www.ebi.ac.uk/pdbsum/3bs3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bs3 RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q5LGD2_BACFN Q5LGD2_BACFN]
 
== Evolutionary Conservation ==
'''Crystal structure of a putative DNA-binding protein from Bacteroides fragilis'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bs/3bs3_consurf.spt"</scriptWhenChecked>
3BS3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BS3 OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Bacteroides fragilis nctc 9343]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Bigelow, L.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bs3 ConSurf].
[[Category: Clancy, S.]]
<div style="clear:both"></div>
[[Category: Cuff, M E.]]
__TOC__
[[Category: Joachimiak, A.]]
</StructureSection>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Bacteroides fragilis NCTC 9343]]
[[Category: dna binding protein]]
[[Category: Large Structures]]
[[Category: dna-binding]]
[[Category: Bigelow L]]
[[Category: mcsg]]
[[Category: Clancy S]]
[[Category: midwest center for structural genomic]]
[[Category: Cuff ME]]
[[Category: protein structure initiative]]
[[Category: Joachimiak A]]
[[Category: psi-2]]
[[Category: structural genomic]]
[[Category: xre-family]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:28:38 2008''

Latest revision as of 11:50, 30 October 2024

Crystal structure of a putative DNA-binding protein from Bacteroides fragilisCrystal structure of a putative DNA-binding protein from Bacteroides fragilis

Structural highlights

3bs3 is a 1 chain structure with sequence from Bacteroides fragilis NCTC 9343. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.65Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5LGD2_BACFN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3bs3, resolution 1.65Å

Drag the structure with the mouse to rotate

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OCA
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