3by5: Difference between revisions

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-[[Image:3by5.jpg|left|200px]]
-<!--
+==Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58==
-The line below this paragraph, containing "STRUCTURE_3by5", creates the "Structure Box" on the page.
+<StructureSection load='3by5' size='340' side='right'caption='[[3by5]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BY5 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.52&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3by5|  PDB=3by5  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3by5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3by5 OCA], [https://pdbe.org/3by5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3by5 RCSB], [https://www.ebi.ac.uk/pdbsum/3by5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3by5 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3by5 TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58'''
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-BY5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BY5 OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/3by5_consurf.spt"</scriptWhenChecked>
-[[Category: Agrobacterium tumefaciens str. c58]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Almo, S C.]]
+  </jmolCheckbox>
-[[Category: Bonanno, J B.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3by5 ConSurf].
-[[Category: Burley, S K.]]
+<div style="clear:both"></div>
-[[Category: Iizuka, M.]]
+__TOC__
-[[Category: Maletic, M.]]
+</StructureSection>
-[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+[[Category: Large Structures]]
-[[Category: Patskovsky, Y.]]
+[[Category: Almo SC]]
-[[Category: Rutter, M.]]
+[[Category: Bonanno JB]]
-[[Category: Sauder, J M.]]
+[[Category: Burley SK]]
-[[Category: Sojitra, S.]]
+[[Category: Iizuka M]]
-[[Category: Wasserman, S R.]]
+[[Category: Maletic M]]
-[[Category: Biosynthetic protein]]
+[[Category: Patskovsky Y]]
-[[Category: Cobalamin biosynthesis protein]]
+[[Category: Rutter M]]
-[[Category: New york structural genomix research consortium]]
+[[Category: Sauder JM]]
-[[Category: Nysgxrc]]
+[[Category: Sojitra S]]
-[[Category: Protein structure initiative]]
+[[Category: Wasserman SR]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Uncharacterized protein]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 21:12:12 2008''