3by5: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3by5.jpg|left|200px]]


{{Structure
==Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58==
|PDB= 3by5 |SIZE=350|CAPTION= <scene name='initialview01'>3by5</scene>, resolution 2.52&Aring;
<StructureSection load='3by5' size='340' side='right'caption='[[3by5]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+A+201'>AC1</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BY5 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.52&#8491;</td></tr>
|GENE= chiG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3by5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3by5 OCA], [https://pdbe.org/3by5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3by5 RCSB], [https://www.ebi.ac.uk/pdbsum/3by5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3by5 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3by5 TOPSAN]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3by5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3by5 OCA], [http://www.ebi.ac.uk/pdbsum/3by5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3by5 RCSB]</span>
== Evolutionary Conservation ==
}}
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
'''Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58'''
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/3by5_consurf.spt"</scriptWhenChecked>
 
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
==About this Structure==
    <text>to colour the structure by Evolutionary Conservation</text>
3BY5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BY5 OCA].  
  </jmolCheckbox>
[[Category: Agrobacterium tumefaciens str. c58]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3by5 ConSurf].
[[Category: Single protein]]
<div style="clear:both"></div>
[[Category: Almo, S C.]]
__TOC__
[[Category: Bonanno, J B.]]
</StructureSection>
[[Category: Burley, S K.]]
[[Category: Large Structures]]
[[Category: Iizuka, M.]]
[[Category: Almo SC]]
[[Category: Maletic, M.]]
[[Category: Bonanno JB]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Burley SK]]
[[Category: Patskovsky, Y.]]
[[Category: Iizuka M]]
[[Category: Rutter, M.]]
[[Category: Maletic M]]
[[Category: Sauder, J M.]]
[[Category: Patskovsky Y]]
[[Category: Sojitra, S.]]
[[Category: Rutter M]]
[[Category: Wasserman, S R.]]
[[Category: Sauder JM]]
[[Category: biosynthetic protein]]
[[Category: Sojitra S]]
[[Category: cobalamin biosynthesis protein]]
[[Category: Wasserman SR]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: structural genomic]]
[[Category: uncharacterized protein]]
[[Category: unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:29:37 2008''

Latest revision as of 04:39, 21 November 2024

Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.52Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3by5, resolution 2.52Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA