1z67: Difference between revisions

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-[[Image:1z67.gif|left|200px]]
- {{Structure
+==Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri==
-|PDB= 1z67 |SIZE=350|CAPTION= <scene name='initialview01'>1z67</scene>, resolution 1.45&Aring;
+<StructureSection load='1z67' size='340' side='right'caption='[[1z67]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=NA:SODIUM ION'>NA</scene>
+<table><tr><td colspan='2'>[[1z67]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457T Shigella flexneri 2a str. 2457T]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z67 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z67 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-|GENE= yidB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42897 Shigella flexneri 2a])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z67 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z67 OCA], [https://pdbe.org/1z67 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z67 RCSB], [https://www.ebi.ac.uk/pdbsum/1z67 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z67 ProSAT], [https://www.topsan.org/Proteins/MCSG/1z67 TOPSAN]</span></td></tr>
+</table>
-'''Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri'''
+== Function ==
+[https://www.uniprot.org/uniprot/A0A384K8I9_SHIFL A0A384K8I9_SHIFL]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-Z67 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z67 OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z6/1z67_consurf.spt"</scriptWhenChecked>
-Structure of YidB protein from Shigella flexneri shows a new fold with homeodomain motif., Osipiuk J, Maltseva N, Dementieva I, Clancy S, Collart F, Joachimiak A, Proteins. 2006 Nov 1;65(2):509-13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16927377 16927377]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Shigella flexneri 2a]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Single protein]]
+  </jmolCheckbox>
-[[Category: Clancy, S.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z67 ConSurf].
-[[Category: Collart, F.]]
+<div style="clear:both"></div>
-[[Category: Dementieva, I.]]
+__TOC__
-[[Category: Joachimiak, A.]]
+</StructureSection>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Large Structures]]
-[[Category: Maltseva, N.]]
+[[Category: Shigella flexneri 2a str. 2457T]]
-[[Category: Osipiuk, J.]]
+[[Category: Clancy S]]
-[[Category: NA]]
+[[Category: Collart F]]
-[[Category: hypothetical protein]]
+[[Category: Dementieva I]]
-[[Category: mcsg]]
+[[Category: Joachimiak A]]
-[[Category: midwest center for structural genomic]]
+[[Category: Maltseva N]]
-[[Category: protein structure initiative]]
+[[Category: Osipiuk J]]
-[[Category: psi]]
-[[Category: shigella flexneri]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:31:40 2008''