1q5c: Difference between revisions

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OCA

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 ==S-S-lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography==
-<StructureSection load='1q5c' size='340' side='right' caption='[[1q5c]], [[Resolution|resolution]] 30.00&Aring;' scene=''>
+<SX load='1q5c' size='340' side='right' viewer='molstar' caption='[[1q5c]], [[Resolution|resolution]] 30.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1q5c]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. The March 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cadherin''  by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_3 10.2210/rcsb_pdb/mom_2008_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5C FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1q5c]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. The March 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cadherin''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_3 10.2210/rcsb_pdb/mom_2008_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q5C FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 30&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1l3w|1l3w]], [[1q55|1q55]], [[1q5a|1q5a]], [[1q5b|1q5b]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5c OCA], [http://pdbe.org/1q5c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q5c RCSB], [http://www.ebi.ac.uk/pdbsum/1q5c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5c ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5c OCA], [https://pdbe.org/1q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q5c RCSB], [https://www.ebi.ac.uk/pdbsum/1q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5c ProSAT]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
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    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/1q5c_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 27: / Line 27: @@
 </div>
 <div class="pdbe-citations 1q5c" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Cadherin 3D structures|Cadherin 3D structures]]
 == References ==
 <references/>
 __TOC__
-</StructureSection>
+</SX>
 [[Category: Cadherin]]
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
 [[Category: RCSB PDB Molecule of the Month]]
-[[Category: Cowin, P]]
+[[Category: Cowin P]]
-[[Category: He, W]]
+[[Category: He W]]
-[[Category: Stokes, D L]]
+[[Category: Stokes DL]]
-[[Category: Adhesion]]
-[[Category: Desmosome]]
-[[Category: Junction]]
-[[Category: Structural protein]]
-[[Category: Trans interaction]]