1ghd: Difference between revisions

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OCA

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 ==Crystal structure of the glutaryl-7-aminocephalosporanic acid acylase by mad phasing==
-<StructureSection load='1ghd' size='340' side='right' caption='[[1ghd]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='1ghd' size='340' side='right'caption='[[1ghd]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ghd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp._130 Pseudomonas sp. 130]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GHD FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ghd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._130 Pseudomonas sp. 130]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GHD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GHD FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ghd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ghd OCA], [http://pdbe.org/1ghd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ghd RCSB], [http://www.ebi.ac.uk/pdbsum/1ghd PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ghd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ghd OCA], [https://pdbe.org/1ghd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ghd RCSB], [https://www.ebi.ac.uk/pdbsum/1ghd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ghd ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/O86089_9PROT O86089_9PROT]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/1ghd_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/1ghd_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ghd ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 27: / Line 31: @@
 ==See Also==
-*[[Cephalosporin acylase|Cephalosporin acylase]]
+*[[Cephalosporin acylase 3D structures|Cephalosporin acylase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Pseudomonas sp. 130]]
-[[Category: Bartlam, M]]
+[[Category: Bartlam M]]
-[[Category: Ding, Y]]
+[[Category: Ding Y]]
-[[Category: He, H]]
+[[Category: He H]]
-[[Category: Jiang, F]]
+[[Category: Jiang F]]
-[[Category: Jiang, W]]
+[[Category: Jiang W]]
-[[Category: Liu, Y]]
+[[Category: Liu Y]]
-[[Category: Mao, X]]
+[[Category: Mao X]]
-[[Category: Rao, Z]]
+[[Category: Rao Z]]
-[[Category: Tang, H]]
+[[Category: Tang H]]
-[[Category: Ye, S]]
+[[Category: Ye S]]
-[[Category: Zhang, S]]
+[[Category: Zhang S]]
-[[Category: Zhao, G]]
+[[Category: Zhao G]]
-[[Category: Cephalosporin acylase]]
-[[Category: Hydrolase]]