1s2d: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 3: / Line 3: @@
 <StructureSection load='1s2d' size='340' side='right'caption='[[1s2d]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1s2d]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_casei_e"_von_freudenreich_and_thoni_1904 "bacillus casei e" von freudenreich and thoni 1904]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S2D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1S2D FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1s2d]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactobacillus_helveticus Lactobacillus helveticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1S2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1S2D FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=AR4:2-AZANYL-5-[3-FLUORANYL-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]OXY-5-OXIDANYLIDENE-PENTANOIC+ACID'>AR4</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=V3M:(2~{S},3~{S},4~{R},5~{R})-3-fluoranyl-5-(hydroxymethyl)oxolane-2,4-diol'>V3M</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1f8y|1f8y]], [[1s2g|1s2g]], [[1s2i|1s2i]], [[1s2l|1s2l]], [[1s3f|1s3f]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1s2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s2d OCA], [https://pdbe.org/1s2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1s2d RCSB], [https://www.ebi.ac.uk/pdbsum/1s2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1s2d ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside_deoxyribosyltransferase Nucleoside deoxyribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.6 2.4.2.6] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1s2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1s2d OCA], [http://pdbe.org/1s2d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1s2d RCSB], [http://www.ebi.ac.uk/pdbsum/1s2d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1s2d ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q8RLY5_LACHE Q8RLY5_LACHE]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 15: / Line 15: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/s2/1s2d_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 33: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus casei e von freudenreich and thoni 1904]]
+[[Category: Lactobacillus helveticus]]
 [[Category: Large Structures]]
-[[Category: Nucleoside deoxyribosyltransferase]]
+[[Category: Anand R]]
-[[Category: Anand, R]]
+[[Category: Ealick SE]]
-[[Category: Ealick, S E]]
+[[Category: Kaminski PA]]
-[[Category: Kaminski, P A]]
-[[Category: Araa]]
-[[Category: Ptd]]
-[[Category: Ribosylate intermediate]]
-[[Category: Transferase]]