1vd3: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Ribonuclease NT in complex with 2'-UMP==
-<StructureSection load='1vd3' size='340' side='right' caption='[[1vd3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='1vd3' size='340' side='right'caption='[[1vd3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1vd3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nicgu Nicgu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VD3 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1vd3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD3 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=U2P:PHOSPHORIC+ACID+MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>U2P</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1vcz|1vcz]], [[1vd1|1vd1]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=U2P:PHOSPHORIC+ACID+MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>U2P</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(2) Ribonuclease T(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.1 3.1.27.1] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd3 OCA], [https://pdbe.org/1vd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd3 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd3 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd3 OCA], [http://pdbe.org/1vd3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vd3 RCSB], [http://www.ebi.ac.uk/pdbsum/1vd3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd3 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9SSV1_NICGU Q9SSV1_NICGU]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
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    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd3_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 21: / Line 22: @@
 ==See Also==
-*[[Ribonuclease|Ribonuclease]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-*[[Temp|Temp]]
 __TOC__
 </StructureSection>
-[[Category: Nicgu]]
+[[Category: Large Structures]]
-[[Category: Kakuta, Y]]
+[[Category: Nicotiana glutinosa]]
-[[Category: Kawano, S]]
+[[Category: Kakuta Y]]
-[[Category: Kimura, M]]
+[[Category: Kawano S]]
-[[Category: Hydrolase]]
+[[Category: Kimura M]]
-[[Category: Nucleic acid]]
-[[Category: Ribonuclease]]
-[[Category: Rna]]