1vd3: Difference between revisions

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-[[Image:1vd3.gif|left|200px]]
- {{Structure
+==Ribonuclease NT in complex with 2'-UMP==
-|PDB= 1vd3 |SIZE=350|CAPTION= <scene name='initialview01'>1vd3</scene>, resolution 1.80&Aring;
+<StructureSection load='1vd3' size='340' side='right'caption='[[1vd3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=U2P:PHOSPHORIC+ACID+MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>U2P</scene>
+<table><tr><td colspan='2'>[[1vd3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD3 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(2) Ribonuclease T(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.1 3.1.27.1] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=U2P:PHOSPHORIC+ACID+MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>U2P</scene></td></tr>
-|DOMAIN=
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd3 OCA], [https://pdbe.org/1vd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd3 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd3 ProSAT]</span></td></tr>
-|RELATEDENTRY=[[1vcz|1VCZ]], [[1vd1|1VD1]]
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd3 OCA], [http://www.ebi.ac.uk/pdbsum/1vd3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vd3 RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q9SSV1_NICGU Q9SSV1_NICGU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd3_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd3 ConSurf].
+<div style="clear:both"></div>
-'''Ribonuclease NT in complex with 2'-UMP'''
+==See Also==
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-VD3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA].
+[[Category: Large Structures]]
 [[Category: Nicotiana glutinosa]]
-[[Category: Ribonuclease T(2)]]
+[[Category: Kakuta Y]]
-[[Category: Single protein]]
+[[Category: Kawano S]]
-[[Category: Kakuta, Y.]]
+[[Category: Kimura M]]
-[[Category: Kawano, S.]]
-[[Category: Kimura, M.]]
-[[Category: hydrolase]]
-[[Category: nucleic acid]]
-[[Category: ribonuclease]]
-[[Category: rna]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:22:42 2008''