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[[Image:1vd3.gif|left|200px]]


{{Structure
==Ribonuclease NT in complex with 2'-UMP==
|PDB= 1vd3 |SIZE=350|CAPTION= <scene name='initialview01'>1vd3</scene>, resolution 1.80&Aring;
<StructureSection load='1vd3' size='340' side='right'caption='[[1vd3]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=U2P:PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER'>U2P</scene>
<table><tr><td colspan='2'>[[1vd3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD3 FirstGlance]. <br>
|ACTIVITY= [http://en.wikipedia.org/wiki/Ribonuclease_T(2) Ribonuclease T(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.1 3.1.27.1]  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=U2P:PHOSPHORIC+ACID+MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]+ESTER'>U2P</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd3 OCA], [https://pdbe.org/1vd3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd3 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q9SSV1_NICGU Q9SSV1_NICGU]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd3 ConSurf].
<div style="clear:both"></div>


'''Ribonuclease NT in complex with 2'-UMP'''
==See Also==
 
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1VD3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD3 OCA].
[[Category: Large Structures]]
[[Category: Nicotiana glutinosa]]
[[Category: Nicotiana glutinosa]]
[[Category: Ribonuclease T(2)]]
[[Category: Kakuta Y]]
[[Category: Single protein]]
[[Category: Kawano S]]
[[Category: Kakuta, Y.]]
[[Category: Kimura M]]
[[Category: Kawano, S.]]
[[Category: Kimura, M.]]
[[Category: U2P]]
[[Category: hydrolase]]
[[Category: nucleic acid]]
[[Category: ribonuclease]]
[[Category: rna]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:43:58 2008''

Latest revision as of 10:33, 30 October 2024

Ribonuclease NT in complex with 2'-UMPRibonuclease NT in complex with 2'-UMP

Structural highlights

1vd3 is a 1 chain structure with sequence from Nicotiana glutinosa. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9SSV1_NICGU

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vd3, resolution 1.80Å

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