1vd1: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1vd1.gif|left|200px]]


{{Structure
==Crystal structure of RNase NT in complex with 5'-AMP==
|PDB= 1vd1 |SIZE=350|CAPTION= <scene name='initialview01'>1vd1</scene>, resolution 1.80&Aring;
<StructureSection load='1vd1' size='340' side='right'caption='[[1vd1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>
<table><tr><td colspan='2'>[[1vd1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD1 FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(2) Ribonuclease T(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.1 3.1.27.1] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd1 OCA], [https://pdbe.org/1vd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd1 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd1 ProSAT]</span></td></tr>
|RELATEDENTRY=[[1vcz|1VCZ]], [[1vd3|1VD3]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd1 OCA], [http://www.ebi.ac.uk/pdbsum/1vd1 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vd1 RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q9SSV1_NICGU Q9SSV1_NICGU]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd1 ConSurf].
<div style="clear:both"></div>


'''Crystal structure of RNase NT in complex with 5'-AMP'''
==See Also==
 
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1VD1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nicotiana_glutinosa Nicotiana glutinosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD1 OCA].
[[Category: Large Structures]]
[[Category: Nicotiana glutinosa]]
[[Category: Nicotiana glutinosa]]
[[Category: Ribonuclease T(2)]]
[[Category: Kakuta Y]]
[[Category: Single protein]]
[[Category: Kawano S]]
[[Category: Kakuta, Y.]]
[[Category: Kimura M]]
[[Category: Kawano, S.]]
[[Category: Kimura, M.]]
[[Category: hydrolase]]
[[Category: nucleic acid]]
[[Category: ribonuclease]]
[[Category: rna]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:22:40 2008''

Latest revision as of 03:36, 21 November 2024

Crystal structure of RNase NT in complex with 5'-AMPCrystal structure of RNase NT in complex with 5'-AMP

Structural highlights

1vd1 is a 1 chain structure with sequence from Nicotiana glutinosa. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q9SSV1_NICGU

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vd1, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA