2sgf: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2sgf.jpg|left|200px]]<br /><applet load="2sgf" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2sgf, resolution 1.75&Aring;" />
-'''PHE 18 VARIANT OF TURKEY OVOMUCOID INHIBITOR THIRD DOMAIN COMPLEXED WITH STREPTOMYCES GRISEUS PROTEINASE B'''<br />
-==About this Structure==
+==PHE 18 VARIANT OF TURKEY OVOMUCOID INHIBITOR THIRD DOMAIN COMPLEXED WITH STREPTOMYCES GRISEUS PROTEINASE B==
-SGF is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Meleagris_gallopavo Meleagris gallopavo] and [http://en.wikipedia.org/wiki/Streptomyces_chryseus Streptomyces chryseus] with <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Streptogrisin_B Streptogrisin B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.81 3.4.21.81] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2SGF OCA].
+<StructureSection load='2sgf' size='340' side='right'caption='[[2sgf]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2sgf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Meleagris_gallopavo Meleagris gallopavo] and [https://en.wikipedia.org/wiki/Streptomyces_griseus Streptomyces griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2SGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2SGF FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2sgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2sgf OCA], [https://pdbe.org/2sgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2sgf RCSB], [https://www.ebi.ac.uk/pdbsum/2sgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2sgf ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PRTB_STRGR PRTB_STRGR] Has a primary specificity for large aliphatic or aromatic amino acids.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sg/2sgf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2sgf ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Proteinase 3D structures|Proteinase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Meleagris gallopavo]]
-[[Category: Protein complex]]
+[[Category: Streptomyces griseus]]
-[[Category: Streptogrisin B]]
+[[Category: Anderson S]]
-[[Category: Streptomyces chryseus]]
+[[Category: Huang K]]
-[[Category: Anderson, S.]]
+[[Category: James MNG]]
-[[Category: Huang, K.]]
+[[Category: Laskowski Jr M]]
-[[Category: James, M N.G.]]
+[[Category: Lu W]]
-[[Category: Jr., M Laskowski.]]
-[[Category: Lu, W.]]
-[[Category: PO4]]
-[[Category: complex (serine protease/inhibitor)]]
-[[Category: protein inhibitor]]
-[[Category: serine proteinase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:49:07 2008''