2pyp: Difference between revisions

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OCA

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 ==PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED==
-<StructureSection load='2pyp' size='340' side='right' caption='[[2pyp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='2pyp' size='340' side='right'caption='[[2pyp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2pyp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PYP FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2pyp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PYP FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pyp OCA], [http://pdbe.org/2pyp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pyp RCSB], [http://www.ebi.ac.uk/pdbsum/2pyp PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=60F:(2~{R})-2-AZANYL-3-[(~{E})-3-(4-HYDROXYPHENYL)PROP-2-ENOYL]SULFANYL-PROPANOIC+ACID'>60F</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pyp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pyp OCA], [https://pdbe.org/2pyp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pyp RCSB], [https://www.ebi.ac.uk/pdbsum/2pyp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pyp ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA]] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
+[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2pyp_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2pyp_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pyp ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 32: / Line 34: @@
 </StructureSection>
 [[Category: Halorhodospira halophila]]
-[[Category: Borgstahl, G E.O]]
+[[Category: Large Structures]]
-[[Category: Burke, P]]
+[[Category: Borgstahl GEO]]
-[[Category: Genick, U K]]
+[[Category: Burke P]]
-[[Category: Getzoff, E D]]
+[[Category: Genick UK]]
-[[Category: Mcree, D E]]
+[[Category: Getzoff ED]]
-[[Category: Moffat, K]]
+[[Category: Mcree DE]]
-[[Category: Ng, K]]
+[[Category: Moffat K]]
-[[Category: Pradervand, C]]
+[[Category: Ng K]]
-[[Category: Ren, Z]]
+[[Category: Pradervand C]]
-[[Category: Schildkamp, W]]
+[[Category: Ren Z]]
-[[Category: Srajer, V]]
+[[Category: Schildkamp W]]
-[[Category: Teng, T]]
+[[Category: Srajer V]]
-[[Category: Chromophore]]
+[[Category: Teng T]]
-[[Category: Light sensor for phototaxis]]
-[[Category: Photoreceptor]]