2pif: Difference between revisions

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-[[Image:2pif.jpg|left|200px]]<br /><applet load="2pif" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pif, resolution 2.30&Aring;" />
-'''Crystal structure of UPF0317 protein PSPTO_5379 from Pseudomonas syringae pv. tomato. NorthEast Structural Genomics target PsR181'''<br />
-==About this Structure==
+==Crystal structure of UPF0317 protein PSPTO_5379 from Pseudomonas syringae pv. tomato. NorthEast Structural Genomics target PsR181==
-PIF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PIF OCA].
+<StructureSection load='2pif' size='340' side='right'caption='[[2pif]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-[[Category: Pseudomonas syringae pv. tomato]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2pif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PIF FirstGlance]. <br>
-[[Category: Abashidze, M.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-[[Category: Acton, T.B.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Baran, M.C.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pif OCA], [https://pdbe.org/2pif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pif RCSB], [https://www.ebi.ac.uk/pdbsum/2pif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pif ProSAT], [https://www.topsan.org/Proteins/NESGC/2pif TOPSAN]</span></td></tr>
-[[Category: Cunningham, K.]]
+</table>
-[[Category: Fang, Y.]]
+== Evolutionary Conservation ==
-[[Category: Forouhar, F.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Hunt, J.F.]]
+Check<jmol>
-[[Category: Liu, J.]]
+  <jmolCheckbox>
-[[Category: Ma, L-C.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pi/2pif_consurf.spt"</scriptWhenChecked>
-[[Category: Montelione, G.T.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Rost, B.]]
+  </jmolCheckbox>
-[[Category: Seetharaman, J.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pif ConSurf].
-[[Category: Tong, L.]]
+<div style="clear:both"></div>
-[[Category: Wang, D.]]
+__TOC__
-[[Category: Xia, R.]]
+</StructureSection>
-[[Category: nesg]]
+[[Category: Large Structures]]
-[[Category: northeast structural genomics consortium]]
+[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
-[[Category: protein structure initiative]]
+[[Category: Abashidze M]]
-[[Category: psi-2]]
+[[Category: Acton TB]]
-[[Category: structural genomics]]
+[[Category: Baran MC]]
-[[Category: upf0317 family]]
+[[Category: Cunningham K]]
+[[Category: Fang Y]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:29:07 2008''
+[[Category: Forouhar F]]
+[[Category: Hunt JF]]
+[[Category: Liu J]]
+[[Category: Ma L-C]]
+[[Category: Montelione GT]]
+[[Category: Rost B]]
+[[Category: Seetharaman J]]
+[[Category: Tong L]]
+[[Category: Wang D]]
+[[Category: Xia R]]