2p71: Difference between revisions

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-{{Seed}}
-[[Image:2p71.png|left|200px]]
-<!--
+==Bombyx mori pheromone binding protein bound to iodohexadecane==
-The line below this paragraph, containing "STRUCTURE_2p71", creates the "Structure Box" on the page.
+<StructureSection load='2p71' size='340' side='right'caption='[[2p71]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2p71]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P71 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P71 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.006&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IHD:1-IODOHEXADECANE'>IHD</scene></td></tr>
-{{STRUCTURE_2p71|  PDB=2p71  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p71 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p71 OCA], [https://pdbe.org/2p71 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p71 RCSB], [https://www.ebi.ac.uk/pdbsum/2p71 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p71 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PBP_BOMMO PBP_BOMMO] This major soluble protein in olfactory sensilla of male moths serves to solubilize the extremely hydrophobic pheromone molecules such as bombykol and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p7/2p71_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p71 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Insect pheromone-binding proteins (PBPs) transport sex pheromones through the aqueous layer surrounding G protein-coupled receptors that initiate signaling events leading to mating. This PBP-receptor system strongly discriminates between ligands with subtle structural differences, but it has proved difficult to distinguish the degree of discrimination of the PBP from that of the G protein-coupled receptor. The three-dimensional structures of the PBP of Bombyx mori, the silkworm moth, both with and without its cognate ligand bombykol ([E,Z]-10,12-hexadecadienol), have been determined by X-ray crystallography and NMR. In this paper, the structures of the same binding protein with bound iodohexadecane and bell pepper odorant were determined at 1.9 and 2.0 A, respectively. These structures illustrate the remarkable plasticity in the ligand binding site of the PBP, but suggest the protein might still act as a filter during pheromone signal processing.
-===Bombyx mori pheromone binding protein bound to iodohexadecane===
+Bombyx mori pheromone-binding protein binding nonpheromone ligands: implications for pheromone recognition.,Lautenschlager C, Leal WS, Clardy J Structure. 2007 Sep;15(9):1148-54. PMID:17850754<ref>PMID:17850754</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2p71" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_17850754}}, adds the Publication Abstract to the page
+*[[Pheromone binding protein|Pheromone binding protein]]
-(as it appears on PubMed at http://www.pubmed.gov), where 17850754 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_17850754}}
+__TOC__
+</StructureSection>
-==About this Structure==
-P71 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P71 OCA].
-==Reference==
-<ref group="xtra">PMID:17850754</ref><references group="xtra"/>
 [[Category: Bombyx mori]]
-[[Category: Clardy, J.]]
+[[Category: Large Structures]]
-[[Category: Lautenschlager, C L.]]
+[[Category: Clardy J]]
-[[Category: Alpha-helical]]
+[[Category: Lautenschlager CL]]
-[[Category: Attractant]]
-[[Category: Binding pocket]]
-[[Category: Liganded]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 18 20:32:20 2009''