2gb5: Difference between revisions

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-[[Image:2gb5.gif|left|200px]]<br /><applet load="2gb5" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2gb5, resolution 2.300&Aring;" />
-'''Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution'''<br />
-==About this Structure==
+==Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution==
-GB5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=ZN:'>ZN</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/NAD(+)_diphosphatase NAD(+) diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.22 3.6.1.22] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GB5 OCA].
+<StructureSection load='2gb5' size='340' side='right'caption='[[2gb5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-[[Category: Escherichia coli]]
+== Structural highlights ==
-[[Category: NAD(+) diphosphatase]]
+<table><tr><td colspan='2'>[[2gb5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GB5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GB5 FirstGlance]. <br>
-[[Category: Single protein]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-[[Category: JCSG, Joint Center for Structural Genomics.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-[[Category: ZN]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gb5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gb5 OCA], [https://pdbe.org/2gb5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gb5 RCSB], [https://www.ebi.ac.uk/pdbsum/2gb5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gb5 ProSAT], [https://www.topsan.org/Proteins/JCSG/2gb5 TOPSAN]</span></td></tr>
-[[Category: 1790429]]
+</table>
-[[Category: jcsg]]
+== Function ==
-[[Category: joint center for structural genomics]]
+[https://www.uniprot.org/uniprot/NUDC_ECOLI NUDC_ECOLI]
-[[Category: nadh pyrophosphatase (ec 3 6.1 22)]]
+== Evolutionary Conservation ==
-[[Category: protein structure initiative]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: psi]]
+Check<jmol>
-[[Category: structural genomics]]
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/2gb5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gb5 ConSurf].
+<div style="clear:both"></div>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:29:59 2008''
+==See Also==
+*[[Inorganic pyrophosphatase 3D structures|Inorganic pyrophosphatase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Escherichia coli K-12]]
+[[Category: Large Structures]]