2fkb: Difference between revisions

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New page: left|200px<br /><applet load="2fkb" size="450" color="white" frame="true" align="right" spinBox="true" caption="2fkb, resolution 2.00Å" /> '''Crystal structure of...
 
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[[Image:2fkb.gif|left|200px]]<br /><applet load="2fkb" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2fkb, resolution 2.00&Aring;" />
'''Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12'''<br />


==About this Structure==
==Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12==
2FKB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with SO4, ACT, MG and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2FKB OCA].  
<StructureSection load='2fkb' size='340' side='right'caption='[[2fkb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
[[Category: Escherichia coli]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2fkb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FKB FirstGlance]. <br>
[[Category: Edwards, A.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
[[Category: Evdokimova, E.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Joachimiak, A.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fkb OCA], [https://pdbe.org/2fkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fkb RCSB], [https://www.ebi.ac.uk/pdbsum/2fkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fkb ProSAT], [https://www.topsan.org/Proteins/MCSG/2fkb TOPSAN]</span></td></tr>
[[Category: Kudritska, M.]]
</table>
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
== Function ==
[[Category: Nocek, B.]]
[https://www.uniprot.org/uniprot/YFCD_ECOLI YFCD_ECOLI]  
[[Category: Savchenko, A.]]
== Evolutionary Conservation ==
[[Category: ACT]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: GOL]]
Check<jmol>
[[Category: MG]]
  <jmolCheckbox>
[[Category: SO4]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/2fkb_consurf.spt"</scriptWhenChecked>
[[Category: escherichia coli k12]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: mad]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: mcsg]]
  </jmolCheckbox>
[[Category: midwest center for structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fkb ConSurf].
[[Category: protein structure initiative]]
<div style="clear:both"></div>
[[Category: psi]]
__TOC__
[[Category: putative nudix hydrolase]]
</StructureSection>
[[Category: putative protein]]
[[Category: Escherichia coli K-12]]
[[Category: structural genomics]]
[[Category: Large Structures]]
 
[[Category: Edwards A]]
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 10:36:01 2007''
[[Category: Evdokimova E]]
[[Category: Joachimiak A]]
[[Category: Kudritska M]]
[[Category: Nocek B]]
[[Category: Savchenko A]]

Latest revision as of 10:59, 30 October 2024

Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12

Structural highlights

2fkb is a 3 chain structure with sequence from Escherichia coli K-12. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

YFCD_ECOLI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2fkb, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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