2a9v: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(17 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2a9v.gif|left|200px]]<br /><applet load="2a9v" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2a9v, resolution 2.240&Aring;" />
'''Crystal structure of (np_394403.1) from THERMOPLASMA ACIDOPHILUM at 2.45 A resolution'''<br />


==About this Structure==
==Crystal structure of a putative gmp synthase subunit a protein (ta0944m) from thermoplasma acidophilum at 2.45 A resolution==
2A9V is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum] with <scene name='pdbligand=CL:'>CL</scene>, <scene name='pdbligand=SCN:'>SCN</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/GMP_synthase_(glutamine-hydrolyzing) GMP synthase (glutamine-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.5.2 6.3.5.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A9V OCA].  
<StructureSection load='2a9v' size='340' side='right'caption='[[2a9v]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
[[Category: GMP synthase (glutamine-hydrolyzing)]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2a9v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A9V FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a9v OCA], [https://pdbe.org/2a9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a9v RCSB], [https://www.ebi.ac.uk/pdbsum/2a9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a9v ProSAT], [https://www.topsan.org/Proteins/JCSG/2a9v TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/GUAAA_THEAC GUAAA_THEAC] Catalyzes the synthesis of GMP from XMP (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/2a9v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a9v ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[GMP synthase|GMP synthase]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermoplasma acidophilum]]
[[Category: Thermoplasma acidophilum]]
[[Category: JCSG, Joint Center for Structural Genomics.]]
[[Category: CL]]
[[Category: GOL]]
[[Category: SCN]]
[[Category: jcsg]]
[[Category: joint center for structural genomics]]
[[Category: np_394403 1]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:25:21 2008''

Latest revision as of 03:46, 21 November 2024

Crystal structure of a putative gmp synthase subunit a protein (ta0944m) from thermoplasma acidophilum at 2.45 A resolutionCrystal structure of a putative gmp synthase subunit a protein (ta0944m) from thermoplasma acidophilum at 2.45 A resolution

Structural highlights

2a9v is a 4 chain structure with sequence from Thermoplasma acidophilum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.24Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

GUAAA_THEAC Catalyzes the synthesis of GMP from XMP (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2a9v, resolution 2.24Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA