1yp7: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water==
-<StructureSection load='1yp7' size='340' side='right' caption='[[1yp7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='1yp7' size='340' side='right'caption='[[1yp7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1yp7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YP7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YP7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1yp7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YP7 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1yp6|1yp6]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MUP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yp7 OCA], [https://pdbe.org/1yp7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yp7 RCSB], [https://www.ebi.ac.uk/pdbsum/1yp7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yp7 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yp7 OCA], [http://pdbe.org/1yp7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yp7 RCSB], [http://www.ebi.ac.uk/pdbsum/1yp7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yp7 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MUP1_MOUSE MUP1_MOUSE]] Binds pheromones that are released from drying urine of males. These pheromones affect the sexual behavior of females.
+[https://www.uniprot.org/uniprot/MUP1_MOUSE MUP1_MOUSE] Binds pheromones that are released from drying urine of males. These pheromones affect the sexual behavior of females.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 16: / Line 15: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yp/1yp7_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 34: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Lk3 transgenic mice]]
+[[Category: Large Structures]]
-[[Category: Barratt, E]]
+[[Category: Mus musculus]]
-[[Category: Bingham, R J]]
+[[Category: Barratt E]]
-[[Category: Homans, S W]]
+[[Category: Bingham RJ]]
-[[Category: Laughton, C A]]
+[[Category: Homans SW]]
-[[Category: Phillips, S E.V]]
+[[Category: Laughton CA]]
-[[Category: Warner, D J]]
+[[Category: Phillips SEV]]
-[[Category: 2-methoxy-3-isobutylpyrazine]]
+[[Category: Warner DJ]]
-[[Category: Beta-barrel]]
-[[Category: Ligand binding protein]]
-[[Category: Lipocalin]]
-[[Category: Mup1]]