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[[Image:1ydh.gif|left|200px]]


{{Structure
==X-ray structure of a lysine decarboxylase-like protein from arabidopsis thaliana gene at5g11950==
|PDB= 1ydh |SIZE=350|CAPTION= <scene name='initialview01'>1ydh</scene>, resolution 2.152&Aring;
<StructureSection load='1ydh' size='340' side='right'caption='[[1ydh]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>
<table><tr><td colspan='2'>[[1ydh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDH FirstGlance]. <br>
|ACTIVITY=
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.152&#8491;</td></tr>
|GENE= AT5G11950 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03641 Lysine_decarbox]</span>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydh OCA], [https://pdbe.org/1ydh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydh RCSB], [https://www.ebi.ac.uk/pdbsum/1ydh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydh ProSAT], [https://www.topsan.org/Proteins/CESG/1ydh TOPSAN]</span></td></tr>
|RELATEDENTRY=[[2a33|2A33]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ydh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydh OCA], [http://www.ebi.ac.uk/pdbsum/1ydh PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ydh RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/LOG8_ARATH LOG8_ARATH] Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.<ref>PMID:19837870</ref>
 
== Evolutionary Conservation ==
'''X-ray structure of a lysine decarboxylase-like protein from arabidopsis thaliana gene at5g11950'''
[[Image:Consurf_key_small.gif|200px|right]]
 
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydh_consurf.spt"</scriptWhenChecked>
1YDH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDH OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==Reference==
  </jmolCheckbox>
X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and AT2g37210., Jeon WB, Allard ST, Bingman CA, Bitto E, Han BW, Wesenberg GE, Phillips GN Jr, Proteins. 2006 Dec 1;65(4):1051-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17048257 17048257]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydh ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Allard, S T.M.]]
[[Category: Allard STM]]
[[Category: Bingman, C A.]]
[[Category: Bingman CA]]
[[Category: Bitto, E.]]
[[Category: Bitto E]]
[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
[[Category: Phillips Jr GN]]
[[Category: Jr., G N.Phillips.]]
[[Category: Wesenberg GE]]
[[Category: Wesenberg, G E.]]
[[Category: at5g11950]]
[[Category: center for eukaryotic structural genomic]]
[[Category: cesg]]
[[Category: lysine decarboxylase-like protein]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:03:46 2008''

Latest revision as of 10:41, 30 October 2024

X-ray structure of a lysine decarboxylase-like protein from arabidopsis thaliana gene at5g11950X-ray structure of a lysine decarboxylase-like protein from arabidopsis thaliana gene at5g11950

Structural highlights

1ydh is a 2 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.152Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

LOG8_ARATH Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Kuroha T, Tokunaga H, Kojima M, Ueda N, Ishida T, Nagawa S, Fukuda H, Sugimoto K, Sakakibara H. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Plant Cell. 2009 Oct;21(10):3152-69. doi: 10.1105/tpc.109.068676. Epub 2009 Oct, 16. PMID:19837870 doi:http://dx.doi.org/10.1105/tpc.109.068676

1ydh, resolution 2.15Å

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