1vdp: Difference between revisions

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[[Image:1vdp.jpg|left|200px]]


{{Structure
==The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space==
|PDB= 1vdp |SIZE=350|CAPTION= <scene name='initialview01'>1vdp</scene>, resolution 1.70&Aring;
<StructureSection load='1vdp' size='340' side='right'caption='[[1vdp]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[1vdp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDP FirstGlance]. <br>
|ACTIVITY= [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
|GENE=  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdp OCA], [https://pdbe.org/1vdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdp RCSB], [https://www.ebi.ac.uk/pdbsum/1vdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdp ProSAT]</span></td></tr>
}}
</table>
== Function ==
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdp_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdp ConSurf].
<div style="clear:both"></div>


'''The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space'''
==See Also==
 
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
 
== References ==
==About this Structure==
<references/>
1VDP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDP OCA].
__TOC__
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Lysozyme]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Aibara S]]
[[Category: Aibara, S.]]
[[Category: DeLucas LJ]]
[[Category: DeLucas, L J.]]
[[Category: Hirose M]]
[[Category: Hirose, M.]]
[[Category: Kidera A]]
[[Category: Kidera, A.]]
[[Category: Shibata K]]
[[Category: Shibata, K.]]
[[Category: Suzuki A]]
[[Category: Suzuki, A.]]
[[Category: Yamane T]]
[[Category: Yamane, T.]]
[[Category: hen egg white]]
[[Category: lysozyme]]
[[Category: microgravity]]
[[Category: monoclinic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:44:12 2008''

Latest revision as of 10:33, 30 October 2024

The crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in spaceThe crystal structure of the monoclinic form of hen egg white lysozyme at 1.7 angstroms resolution in space

Structural highlights

1vdp is a 2 chain structure with sequence from Gallus gallus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.7Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

LYSC_CHICK Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

References

  1. ↑ Maehashi K, Matano M, Irisawa T, Uchino M, Kashiwagi Y, Watanabe T. Molecular characterization of goose- and chicken-type lysozymes in emu (Dromaius novaehollandiae): evidence for extremely low lysozyme levels in emu egg white. Gene. 2012 Jan 15;492(1):244-9. doi: 10.1016/j.gene.2011.10.021. Epub 2011 Oct, 25. PMID:22044478 doi:10.1016/j.gene.2011.10.021

1vdp, resolution 1.70Å

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