1vat: Difference between revisions

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-{{Seed}}
-[[Image:1vat.png|left|200px]]
-<!--
+==Iodine derivative of hen egg-white lysozyme==
-The line below this paragraph, containing "STRUCTURE_1vat", creates the "Structure Box" on the page.
+<StructureSection load='1vat' size='340' side='right'caption='[[1vat]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1vat]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VAT FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
-{{STRUCTURE_1vat|  PDB=1vat  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vat OCA], [https://pdbe.org/1vat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vat RCSB], [https://www.ebi.ac.uk/pdbsum/1vat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vat ProSAT], [https://www.topsan.org/Proteins/RSGI/1vat TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/va/1vat_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vat ConSurf].
+<div style="clear:both"></div>
-===Iodine derivative of hen egg-white lysozyme===
+==See Also==
+*[[Lysozyme 3D structures|Lysozyme 3D structures]]
+== References ==
-==About this Structure==
+<references/>
-VAT is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VAT OCA].
+__TOC__
+</StructureSection>
 [[Category: Gallus gallus]]
-[[Category: Lysozyme]]
+[[Category: Large Structures]]
-[[Category: Kamiya, N.]]
+[[Category: Kamiya N]]
-[[Category: Kawamoto, M.]]
+[[Category: Kawamoto M]]
-[[Category: Miki, K.]]
+[[Category: Miki K]]
-[[Category: Miyatake, H.]]
+[[Category: Miyatake H]]
-[[Category: Park, S Y.]]
+[[Category: Park SY]]
-[[Category: Takeda, K.]]
+[[Category: Takeda K]]
-[[Category: Hydrolase]]
-[[Category: Iodine-derivative]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 25 11:30:49 2009''