1np4: Difference between revisions

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 ==CRYSTAL STRUCTURE OF NITROPHORIN 4 FROM RHODNIUS PROLIXUS==
-<StructureSection load='1np4' size='340' side='right' caption='[[1np4]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+<StructureSection load='1np4' size='340' side='right'caption='[[1np4]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1np4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopr Rhopr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NP4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1np4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodnius_prolixus Rhodnius prolixus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NP4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NH3:AMMONIA'>NH3</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1np4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1np4 OCA], [http://pdbe.org/1np4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1np4 RCSB], [http://www.ebi.ac.uk/pdbsum/1np4 PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NH3:AMMONIA'>NH3</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1np4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1np4 OCA], [https://pdbe.org/1np4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1np4 RCSB], [https://www.ebi.ac.uk/pdbsum/1np4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1np4 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/NP4_RHOPR NP4_RHOPR]] Heme-based protein that deliver nitric oxide gas (NO) to the victim while feeding, resulting in vasodilation and inhibition of platelet aggregation. Also bind tightly to histamine, which is released by the host to induce wound healing (By similarity).
+[https://www.uniprot.org/uniprot/NP4_RHOPR NP4_RHOPR] Heme-based protein that deliver nitric oxide gas (NO) to the victim while feeding, resulting in vasodilation and inhibition of platelet aggregation. Also bind tightly to histamine, which is released by the host to induce wound healing (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/1np4_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/1np4_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1np4 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
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 </div>
 <div class="pdbe-citations 1np4" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Nitrophorin|Nitrophorin]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Rhopr]]
+[[Category: Large Structures]]
-[[Category: Andersen, J F]]
+[[Category: Rhodnius prolixus]]
-[[Category: Balfour, C A]]
+[[Category: Andersen JF]]
-[[Category: Champagne, D E]]
+[[Category: Balfour CA]]
-[[Category: Montfort, W R]]
+[[Category: Champagne DE]]
-[[Category: Weichsel, A]]
+[[Category: Montfort WR]]
-[[Category: Antihistamine]]
+[[Category: Weichsel A]]
-[[Category: Bilin binding protein]]
-[[Category: Ferric heme]]
-[[Category: Lipocalin]]
-[[Category: Nitric oxide transport]]
-[[Category: Transport protein]]
-[[Category: Vasodilator]]