1mv4: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==TM9A251-284: A Peptide Model of the C-Terminus of a Rat Striated Alpha Tropomyosin==
-<StructureSection load='1mv4' size='340' side='right' caption='[[1mv4]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='1mv4' size='340' side='right'caption='[[1mv4]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1mv4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MV4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1MV4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1mv4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MV4 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ihq|1ihq]], [[1tmz|1tmz]], [[1ic2|1ic2]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TPM1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mv4 OCA], [https://pdbe.org/1mv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mv4 RCSB], [https://www.ebi.ac.uk/pdbsum/1mv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mv4 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mv4 OCA], [http://pdbe.org/1mv4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1mv4 RCSB], [http://www.ebi.ac.uk/pdbsum/1mv4 PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/TPM1_RAT TPM1_RAT]] Binds to actin filaments in muscle and non-muscle cells. Plays a central role, in association with the troponin complex, in the calcium dependent regulation of vertebrate striated muscle contraction. Smooth muscle contraction is regulated by interaction with caldesmon. In non-muscle cells is implicated in stabilizing cytoskeleton actin filaments.
+[https://www.uniprot.org/uniprot/TPM1_RAT TPM1_RAT] Binds to actin filaments in muscle and non-muscle cells. Plays a central role, in association with the troponin complex, in the calcium dependent regulation of vertebrate striated muscle contraction. Smooth muscle contraction is regulated by interaction with caldesmon. In non-muscle cells is implicated in stabilizing cytoskeleton actin filaments.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mv/1mv4_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mv/1mv4_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mv4 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 30: / Line 30: @@
 ==See Also==
-*[[Tropomyosin|Tropomyosin]]
+*[[Tropomyosin 3D structures|Tropomyosin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Buffalo rat]]
+[[Category: Large Structures]]
-[[Category: Graboski, S]]
+[[Category: Rattus norvegicus]]
-[[Category: Greenfield, N J]]
+[[Category: Graboski S]]
-[[Category: Hitchcock-Degregori, S E]]
+[[Category: Greenfield NJ]]
-[[Category: Huang, Y]]
+[[Category: Hitchcock-Degregori SE]]
-[[Category: Montelione, G T]]
+[[Category: Huang Y]]
-[[Category: Palm, T]]
+[[Category: Montelione GT]]
-[[Category: Swapna, G V.T]]
+[[Category: Palm T]]
-[[Category: Actin-binding]]
+[[Category: Swapna GVT]]
-[[Category: Alpha-helix]]
-[[Category: Coiled-coil]]
-[[Category: De novo protein]]
-[[Category: Dimer]]
-[[Category: Disulfide cross-linked]]
-[[Category: Exon 9a]]
-[[Category: Muscle]]
-[[Category: Peptide-model]]
-[[Category: Tropomyosin]]
-[[Category: Troponin binding]]
-[[Category: Two-chained]]