1moz: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:1moz.gif|left|200px]]<br /><applet load="1moz" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1moz, resolution 3.17&Aring;" />
-'''ADP-ribosylation factor-like 1 (ARL1) from Saccharomyces cerevisiae'''<br />
-==Overview==
+==ADP-ribosylation factor-like 1 (ARL1) from Saccharomyces cerevisiae==
-Structures were determined by x-ray crystallography for two members of the, ADP-ribosylation factor (ARF) family of regulatory GTPases, yeast ARF1 and, ARL1, and were compared with previously determined structures of human, ARF1 and ARF6. These analyses revealed an overall conserved fold but, differences in primary sequence and length, particularly in an N-terminal, loop, lead to differences in nucleotide and divalent metal binding., Packing of hydrophobic residues is central to the interplay between the, N-terminal alpha-helix, switch I, and the interswitch region, which along, with differences in surface electrostatics provide explanations for the, different biophysical and biochemical properties of ARF and ARF-like, proteins.
+<StructureSection load='1moz' size='340' side='right'caption='[[1moz]], [[Resolution|resolution]] 3.17&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1moz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MOZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MOZ FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.17&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1moz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1moz OCA], [https://pdbe.org/1moz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1moz RCSB], [https://www.ebi.ac.uk/pdbsum/1moz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1moz ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ARL1_YEAST ARL1_YEAST] Recruits golgins such as IMH1 to the Golgi. Can bind and hydrolyze GTP. May be involved in trafficking events within the endosomal system.<ref>PMID:12052896</ref> <ref>PMID:12620188</ref> <ref>PMID:12620189</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mo/1moz_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1moz ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Structures were determined by x-ray crystallography for two members of the ADP-ribosylation factor (ARF) family of regulatory GTPases, yeast ARF1 and ARL1, and were compared with previously determined structures of human ARF1 and ARF6. These analyses revealed an overall conserved fold but differences in primary sequence and length, particularly in an N-terminal loop, lead to differences in nucleotide and divalent metal binding. Packing of hydrophobic residues is central to the interplay between the N-terminal alpha-helix, switch I, and the interswitch region, which along with differences in surface electrostatics provide explanations for the different biophysical and biochemical properties of ARF and ARF-like proteins.
-==About this Structure==
+Structures of yeast ARF2 and ARL1: distinct roles for the N terminus in the structure and function of ARF family GTPases.,Amor JC, Horton JR, Zhu X, Wang Y, Sullards C, Ringe D, Cheng X, Kahn RA J Biol Chem. 2001 Nov 9;276(45):42477-84. Epub 2001 Sep 4. PMID:11535602<ref>PMID:11535602</ref>
-MOZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with GDP as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1MOZ OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-Structures of yeast ARF2 and ARL1: distinct roles for the N terminus in the structure and function of ARF family GTPases., Amor JC, Horton JR, Zhu X, Wang Y, Sullards C, Ringe D, Cheng X, Kahn RA, J Biol Chem. 2001 Nov 9;276(45):42477-84. Epub 2001 Sep 4. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11535602 11535602]
+</div>
+<div class="pdbe-citations 1moz" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Single protein]]
+[[Category: Amor JC]]
-[[Category: Amor, J.C.]]
+[[Category: Cheng X]]
-[[Category: Cheng, X.]]
+[[Category: Horton JR]]
-[[Category: Horton, J.R.]]
+[[Category: Kahn RA]]
-[[Category: Kahn, R.A.]]
+[[Category: Ringe D]]
-[[Category: Ringe, D.]]
+[[Category: Sullards C]]
-[[Category: Sullards, C.]]
+[[Category: Wang Y]]
-[[Category: Wang, Y.]]
+[[Category: Zhu X]]
-[[Category: Zhu, X.]]
-[[Category: GDP]]
-[[Category: gtp-binding]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 21:35:56 2007''