1j9a: Difference between revisions

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 ==OLIGORIBONUCLEASE==
-<StructureSection load='1j9a' size='340' side='right' caption='[[1j9a]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+<StructureSection load='1j9a' size='340' side='right'caption='[[1j9a]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1j9a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J9A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J9A FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1j9a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J9A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J9A FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j9a OCA], [http://pdbe.org/1j9a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j9a RCSB], [http://www.ebi.ac.uk/pdbsum/1j9a PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j9a OCA], [https://pdbe.org/1j9a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j9a RCSB], [https://www.ebi.ac.uk/pdbsum/1j9a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j9a ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/ORN_HAEIN ORN_HAEIN]] 3'-to-5' exoribonuclease specific for small oligoribonucleotides (By similarity).
+[https://www.uniprot.org/uniprot/ORN_HAEIN ORN_HAEIN] 3'-to-5' exoribonuclease specific for small oligoribonucleotides (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/1j9a_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j9/1j9a_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j9a ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[Ribonuclease|Ribonuclease]]
+*[[Exonuclease 3D structures|Exonuclease 3D structures]]
-*[[Temp|Temp]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 __TOC__
 </StructureSection>
 [[Category: Haemophilus influenzae]]
-[[Category: Bonander, N]]
+[[Category: Large Structures]]
-[[Category: Eisenstein, E]]
+[[Category: Bonander N]]
-[[Category: Gilliland, G L]]
+[[Category: Eisenstein E]]
-[[Category: Ladner, J E]]
+[[Category: Gilliland GL]]
-[[Category: S2F, Structure 2.Function Project]]
+[[Category: Ladner JE]]
-[[Category: Tordova, M]]
+[[Category: Tordova M]]
-[[Category: Exoribonuclease]]
-[[Category: Hydrolase]]
-[[Category: Oligoribonuclease]]
-[[Category: Ribonuclease]]
-[[Category: S2f]]
-[[Category: Structural genomic]]
-[[Category: Structure 2 function project]]