1g65: Difference between revisions

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-[[Image:1g65.gif|left|200px]]
-<!--
+==Crystal structure of epoxomicin:20s proteasome reveals a molecular basis for selectivity of alpha,beta-epoxyketone proteasome inhibitors==
-The line below this paragraph, containing "STRUCTURE_1g65", creates the "Structure Box" on the page.
+<StructureSection load='1g65' size='340' side='right'caption='[[1g65]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1g65]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G65 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G65 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=04D:(2R,3R,4S)-4-AMINO-2,6-DIMETHYLHEPTANE-1,3-DIOL'>04D</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=IML:N-METHYL-ISOLEUCINE'>IML</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-{{STRUCTURE_1g65|  PDB=1g65  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g65 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g65 OCA], [https://pdbe.org/1g65 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g65 RCSB], [https://www.ebi.ac.uk/pdbsum/1g65 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g65 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PSB4_YEAST PSB4_YEAST] The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity. This subunit has a chymotrypsin-like activity.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g6/1g65_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g65 ConSurf].
+<div style="clear:both"></div>
-'''CRYSTAL STRUCTURE OF EPOXOMICIN:20S PROTEASOME REVEALS A MOLECULAR BASIS FOR SELECTIVITY OF ALPHA,BETA-EPOXYKETONE PROTEASOME INHIBITORS'''
+==See Also==
+*[[Proteasome 3D structures|Proteasome 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-G65 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G65 OCA].
+[[Category: Large Structures]]
-[[Category: Proteasome endopeptidase complex]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Protein complex]]
+[[Category: Crews C]]
-[[Category: Saccharomyces cerevisiae]]
+[[Category: Groll M]]
-[[Category: Crews, C.]]
+[[Category: Huber R]]
-[[Category: Groll, M.]]
+[[Category: Kairies N]]
-[[Category: Huber, R.]]
+[[Category: Kim KB]]
-[[Category: Kairies, N.]]
-[[Category: Kim, K B.]]
-[[Category: Epoxomicin]]
-[[Category: Ntn-hydolase]]
-[[Category: Protease]]
-[[Category: Proteasome]]
-[[Category: Ubiquitin]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 17:11:16 2008''