1dvh: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==STRUCTURE AND DYNAMICS OF FERROCYTOCHROME C553 FROM DESULFOVIBRIO VULGARIS STUDIED BY NMR SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS==
-<StructureSection load='1dvh' size='340' side='right' caption='[[1dvh]], [[NMR_Ensembles_of_Models | 36 NMR models]]' scene=''>
+<StructureSection load='1dvh' size='340' side='right'caption='[[1dvh]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1dvh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DVH FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1dvh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DVH FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 36 models</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dvh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dvh OCA], [http://pdbe.org/1dvh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dvh RCSB], [http://www.ebi.ac.uk/pdbsum/1dvh PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dvh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dvh OCA], [https://pdbe.org/1dvh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dvh RCSB], [https://www.ebi.ac.uk/pdbsum/1dvh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dvh ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CY553_DESVH CY553_DESVH]] Natural electron acceptor for a formate dehydrogenase.
+[https://www.uniprot.org/uniprot/CY553_NITV2 CY553_NITV2] Natural electron acceptor for a formate dehydrogenase.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dvh_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dvh_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 29: / Line 31: @@
 ==See Also==
-*[[Cytochrome c|Cytochrome c]]
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Atcc 29579]]
+[[Category: Desulfovibrio vulgaris]]
-[[Category: Blackledge, M J]]
+[[Category: Large Structures]]
-[[Category: Bruschi, M]]
+[[Category: Blackledge MJ]]
-[[Category: Guerlesquin, F]]
+[[Category: Bruschi M]]
-[[Category: Marion, D]]
+[[Category: Guerlesquin F]]
-[[Category: Medvedeva, S]]
+[[Category: Marion D]]
-[[Category: Poncin, M]]
+[[Category: Medvedeva S]]
-[[Category: Electron transport]]
+[[Category: Poncin M]]