1c2n: Difference between revisions

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OCA

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 ==CYTOCHROME C2, NMR, 20 STRUCTURES==
-<StructureSection load='1c2n' size='340' side='right' caption='[[1c2n]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1c2n' size='340' side='right'caption='[[1c2n]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1c2n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C2N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C2N FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1c2n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus_SB_1003 Rhodobacter capsulatus SB 1003]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C2N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C2N FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c2n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c2n OCA], [http://pdbe.org/1c2n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c2n RCSB], [http://www.ebi.ac.uk/pdbsum/1c2n PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c2n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c2n OCA], [https://pdbe.org/1c2n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c2n RCSB], [https://www.ebi.ac.uk/pdbsum/1c2n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c2n ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CYC2_RHOCB CYC2_RHOCB]] Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is found in some non-photosynthetic bacteria.
+[https://www.uniprot.org/uniprot/CYC2_RHOCB CYC2_RHOCB] Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is found in some non-photosynthetic bacteria.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/1c2n_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c2/1c2n_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1c2n ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 29: / Line 31: @@
 ==See Also==
-*[[Cytochrome c|Cytochrome c]]
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Rhodobacter capsulatus]]
+[[Category: Large Structures]]
-[[Category: Blackledge, M]]
+[[Category: Rhodobacter capsulatus SB 1003]]
-[[Category: Brutscher, B]]
+[[Category: Blackledge M]]
-[[Category: Caffrey, M S]]
+[[Category: Brutscher B]]
-[[Category: Cordier, F]]
+[[Category: Caffrey MS]]
-[[Category: Cusanovich, M A]]
+[[Category: Cordier F]]
-[[Category: Marion, D]]
+[[Category: Cusanovich MA]]
-[[Category: Electron transport]]
+[[Category: Marion D]]