1bqi: Difference between revisions

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OCA

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 ==USE OF PAPAIN AS A MODEL FOR THE STRUCTURE-BASED DESIGN OF CATHEPSIN K INHIBITORS. CRYSTAL STRUCTURES OF TWO PAPAIN INHIBITOR COMPLEXES DEMONSTRATE BINDING TO S'-SUBSITES.==
-<StructureSection load='1bqi' size='340' side='right' caption='[[1bqi]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+<StructureSection load='1bqi' size='340' side='right'caption='[[1bqi]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1bqi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BQI FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1bqi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BQI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQI FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SBA:CARBOBENZYLOXY-(L)-LEUCINYL-(L)LEUCINYL+METHOXYMETHYLKETONE'>SBA</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bqi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bqi OCA], [http://pdbe.org/1bqi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bqi RCSB], [http://www.ebi.ac.uk/pdbsum/1bqi PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SBA:CARBOBENZYLOXY-(L)-LEUCINYL-(L)LEUCINYL+METHOXYMETHYLKETONE'>SBA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bqi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bqi OCA], [https://pdbe.org/1bqi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bqi RCSB], [https://www.ebi.ac.uk/pdbsum/1bqi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bqi ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/PAPA1_CARPA PAPA1_CARPA]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/1bqi_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bq/1bqi_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bqi ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 33: / Line 37: @@
 </StructureSection>
 [[Category: Carica papaya]]
-[[Category: Abdel-Mequid, S S]]
+[[Category: Large Structures]]
-[[Category: Carr, T J]]
+[[Category: Abdel-Mequid SS]]
-[[Category: Desjarlais, R L]]
+[[Category: Carr TJ]]
-[[Category: Janson, C A]]
+[[Category: Desjarlais RL]]
-[[Category: Lalonde, J M]]
+[[Category: Janson CA]]
-[[Category: Smith, W W]]
+[[Category: Lalonde JM]]
-[[Category: Thompson, S K]]
+[[Category: Smith WW]]
-[[Category: Tomaszek, T A]]
+[[Category: Thompson SK]]
-[[Category: Veber, D F]]
+[[Category: Tomaszek TA]]
-[[Category: Yamashita, D S]]
+[[Category: Veber DF]]
-[[Category: Zhao, B]]
+[[Category: Yamashita DS]]
-[[Category: Hydrolase]]
+[[Category: Zhao B]]
-[[Category: Papain]]
-[[Category: Sulfhydryl proteinase]]