2bdn: Difference between revisions

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-[[Image:2bdn.png|left|200px]]
-{{STRUCTURE_2bdn|  PDB=2bdn  |  SCENE=  }}
+==Crystal structure of human MCP-1 bound to a blocking antibody, 11K2==
+<StructureSection load='2bdn' size='340' side='right'caption='[[2bdn]], [[Resolution|resolution]] 2.53&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2bdn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDN FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.53&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdn OCA], [https://pdbe.org/2bdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdn RCSB], [https://www.ebi.ac.uk/pdbsum/2bdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdn ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CCL2_HUMAN CCL2_HUMAN] Chemotactic factor that attracts monocytes and basophils but not neutrophils or eosinophils. Augments monocyte anti-tumor activity. Has been implicated in the pathogenesis of diseases characterized by monocytic infiltrates, like psoriasis, rheumatoid arthritis or atherosclerosis. May be involved in the recruitment of monocytes into the arterial wall during the disease process of atherosclerosis.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdn_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdn ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Monocyte chemoattractant proteins (MCPs) are cytokines that direct immune cells bearing appropriate receptors to sites of inflammation or injury and are therefore attractive therapeutic targets for inhibitory molecules. 11K2 is a blocking mouse monoclonal antibody active against several human and murine MCPs. A 2.5 A structure of the Fab fragment of this antibody in complex with human MCP-1 has been solved. The Fab blocks CCR2 receptor binding to MCP-1 through an adjacent but distinct binding site. The orientation of the Fab indicates that a single MCP-1 dimer will bind two 11K2 antibodies. Several key residues on the antibody and on human MCPs were predicted to be involved in antibody selectivity. Mutational analysis of these residues confirms their involvement in the antibody-chemokine interaction. In addition to mutations that decreased or disrupted binding, one antibody mutation resulted in a 70-fold increase in affinity for human MCP-2. A key residue missing in human MCP-3, a chemokine not recognized by the antibody, was identified and engineering the preferred residue into the chemokine conferred binding to the antibody.
-===Crystal structure of human MCP-1 bound to a blocking antibody, 11K2===
+Structure activity relationships of monocyte chemoattractant proteins in complex with a blocking antibody.,Reid C, Rushe M, Jarpe M, van Vlijmen H, Dolinski B, Qian F, Cachero TG, Cuervo H, Yanachkova M, Nwankwo C, Wang X, Etienne N, Garber E, Bailly V, de Fougerolles A, Boriack-Sjodin PA Protein Eng Des Sel. 2006 Jul;19(7):317-24. Epub 2006 May 8. PMID:16682434<ref>PMID:16682434</ref>
-{{ABSTRACT_PUBMED_16682434}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2bdn" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[2bdn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDN OCA].
+*[[Antibody 3D structures|Antibody 3D structures]]
+*[[Monocyte chemoattractant protein|Monocyte chemoattractant protein]]
-==Reference==
+*[[3D structures of non-human antibody|3D structures of non-human antibody]]
-<ref group="xtra">PMID:016682434</ref><references group="xtra"/>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
-[[Category: Bailly, V.]]
+[[Category: Bailly V]]
-[[Category: Boriack-Sjodin, P A.]]
+[[Category: Boriack-Sjodin PA]]
-[[Category: Jarpe, M]]
+[[Category: Jarpe M]]
-[[Category: Reid, C.]]
+[[Category: Reid C]]
-[[Category: Rushe, M.]]
+[[Category: Rushe M]]
-[[Category: Vlijmen, Hvan.]]
+[[Category: Van Vlijmen H]]
-[[Category: Antibody-antigen complex]]
-[[Category: Immune system]]