1yh3: Difference between revisions

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-[[Image:1yh3.gif|left|200px]]
- {{Structure
+==Crystal structure of human CD38 extracellular domain==
-|PDB= 1yh3 |SIZE=350|CAPTION= <scene name='initialview01'>1yh3</scene>, resolution 1.91&Aring;
+<StructureSection load='1yh3' size='340' side='right'caption='[[1yh3]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[1yh3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YH3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YH3 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_nucleosidase NAD(+) nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.5 3.2.2.5] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-|GENE= CD38 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yh3 OCA], [https://pdbe.org/1yh3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yh3 RCSB], [https://www.ebi.ac.uk/pdbsum/1yh3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yh3 ProSAT]</span></td></tr>
-|DOMAIN=
+</table>
-|RELATEDENTRY=
+== Function ==
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yh3 OCA], [http://www.ebi.ac.uk/pdbsum/1yh3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1yh3 RCSB]</span>
+[https://www.uniprot.org/uniprot/CD38_HUMAN CD38_HUMAN] Synthesizes cyclic ADP-ribose, a second messenger for glucose-induced insulin secretion. Also has cADPr hydrolase activity. Also moonlights as a receptor in cells of the immune system.
-}}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yh/1yh3_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yh3 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Human CD38 is a multifunctional protein involved in diverse functions. As an enzyme, it is responsible for the synthesis of two Ca2+ messengers, cADPR and NAADP; as an antigen, it is involved in regulating cell adhesion, differentiation, and proliferation. Besides, CD38 is a marker of progression of HIV-1 infection and a negative prognostic marker of B-CLL. We have determined the crystal structure of the soluble extracellular domain of human CD38 to 1.9 A resolution. The enzyme's overall topology is similar to the related proteins CD157 and the Aplysia ADP-ribosyl cyclase, except with large structural changes at the two termini. The extended positively charged N terminus has lateral associations with the other CD38 molecule in the crystallographic asymmetric unit. The analysis of the CD38 substrate binding models revealed two key residues that may be critical in controlling CD38's multifunctionality of NAD hydrolysis, ADP-ribosyl cyclase, and cADPR hydrolysis activities.
-'''Crystal structure of human CD38 extracellular domain'''
+Crystal structure of human CD38 extracellular domain.,Liu Q, Kriksunov IA, Graeff R, Munshi C, Lee HC, Hao Q Structure. 2005 Sep;13(9):1331-9. PMID:16154090<ref>PMID:16154090</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1yh3" style="background-color:#fffaf0;"></div>
-==Overview==
+==See Also==
-Human CD38 is a multifunctional protein involved in diverse functions. As an enzyme, it is responsible for the synthesis of two Ca2+ messengers, cADPR and NAADP; as an antigen, it is involved in regulating cell adhesion, differentiation, and proliferation. Besides, CD38 is a marker of progression of HIV-1 infection and a negative prognostic marker of B-CLL. We have determined the crystal structure of the soluble extracellular domain of human CD38 to 1.9 A resolution. The enzyme's overall topology is similar to the related proteins CD157 and the Aplysia ADP-ribosyl cyclase, except with large structural changes at the two termini. The extended positively charged N terminus has lateral associations with the other CD38 molecule in the crystallographic asymmetric unit. The analysis of the CD38 substrate binding models revealed two key residues that may be critical in controlling CD38's multifunctionality of NAD hydrolysis, ADP-ribosyl cyclase, and cADPR hydrolysis activities.
+*[[Cluster of Differentiation CD38|Cluster of Differentiation CD38]]
+== References ==
-==About this Structure==
+<references/>
-YH3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YH3 OCA].
+__TOC__
+</StructureSection>
-==Reference==
-Crystal structure of human CD38 extracellular domain., Liu Q, Kriksunov IA, Graeff R, Munshi C, Lee HC, Hao Q, Structure. 2005 Sep;13(9):1331-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16154090 16154090]
 [[Category: Homo sapiens]]
-[[Category: NAD(+) nucleosidase]]
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Graeff R]]
-[[Category: Graeff, R.]]
+[[Category: Hao Q]]
-[[Category: Hao, Q.]]
+[[Category: Kriksunov IA]]
-[[Category: Kriksunov, I A.]]
+[[Category: Lee HC]]
-[[Category: Lee, H C.]]
+[[Category: Liu Q]]
-[[Category: Liu, Q.]]
+[[Category: Munshi C]]
-[[Category: Munshi, C.]]
-[[Category: cell surface receptor]]
-[[Category: membrane association]]
-[[Category: parallel beta sheets,two domain]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:07:08 2008''