2cdo: Difference between revisions
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== | |||
<StructureSection load='2cdo' size='340' side='right' caption='[[2cdo]], [[Resolution|resolution]] 1.64Å' scene=''> | ==structure of agarase carbohydrate binding module in complex with neoagarohexaose== | ||
<StructureSection load='2cdo' size='340' side='right'caption='[[2cdo]], [[Resolution|resolution]] 1.64Å' scene=''> | |||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2cdo]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2cdo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharophagus_degradans Saccharophagus degradans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CDO FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand= | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AAL:3,6-ANHYDRO-L-GALACTOSE'>AAL</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cdo OCA], [https://pdbe.org/2cdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cdo RCSB], [https://www.ebi.ac.uk/pdbsum/2cdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cdo ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q6DN99_9GAMM Q6DN99_9GAMM] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/2cdo_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/2cdo_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Saccharophagus degradans]] | ||
[[Category: | [[Category: Bolam DN]] | ||
[[Category: | [[Category: Boraston AB]] | ||
[[Category: Czjzek | [[Category: Czjzek M]] | ||
[[Category: Davies | [[Category: Davies GJ]] | ||
[[Category: Gilbert | [[Category: Gilbert HJ]] | ||
[[Category: Henshaw | [[Category: Henshaw J]] | ||
[[Category: Horne | [[Category: Horne A]] | ||
[[Category: Hutcheson | [[Category: Hutcheson SW]] | ||
[[Category: Money | [[Category: Money VA]] | ||
[[Category: | [[Category: Van Bueren AL]] | ||
[[Category: | [[Category: Weiner RM]] | ||