1e9v: Difference between revisions

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-[[Image:1e9v.gif|left|200px]]<br />
-<applet load="1e9v" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1e9v, resolution 1.7900&Aring;" />
-'''XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS'''<br />
-==About this Structure==
+==XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS==
-E9V is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]] with FSO, SF4, XE, EDO, TRS, ACY and GOL as [[http://en.wikipedia.org/wiki/ligands ligands]]. Structure known Active Site: FSO. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1E9V OCA]].
+<StructureSection load='1e9v' size='340' side='right'caption='[[1e9v]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1e9v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E9V FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e9v OCA], [https://pdbe.org/1e9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e9v RCSB], [https://www.ebi.ac.uk/pdbsum/1e9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e9v ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/HCP_NITV2 HCP_NITV2] Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.[HAMAP-Rule:MF_00069]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/1e9v_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e9v ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Desulfovibrio vulgaris]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Bailey, S.]]
+[[Category: Bailey S]]
-[[Category: Cooper, S.J.]]
+[[Category: Cooper SJ]]
-[[Category: Lindley, P.F.]]
+[[Category: Lindley PF]]
-[[Category: Rizkallah, P.J.]]
+[[Category: Rizkallah PJ]]
-[[Category: ACY]]
-[[Category: EDO]]
-[[Category: FSO]]
-[[Category: GOL]]
-[[Category: SF4]]
-[[Category: TRS]]
-[[Category: XE]]
-[[Category: cubane]]
-[[Category: fuscoredoxin]]
-[[Category: hybrid cluster]]
-[[Category: hydrophobic cavity]]
-[[Category: iron sulfur]]
-[[Category: prismane]]
-[[Category: s-mercaptocysteine]]
-[[Category: thiocysteine]]
-[[Category: xenon]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 15:09:17 2007''