1e9v: Difference between revisions

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[[Image:1e9v.gif|left|200px]]<br /><applet load="1e9v" size="350" color="white" frame="true" align="right" spinBox="true"
caption="1e9v, resolution 1.7900&Aring;" />
'''XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS'''<br />


==About this Structure==
==XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS==
1E9V is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with <scene name='pdbligand=FSO:'>FSO</scene>, <scene name='pdbligand=SF4:'>SF4</scene>, <scene name='pdbligand=XE:'>XE</scene>, <scene name='pdbligand=EDO:'>EDO</scene>, <scene name='pdbligand=TRS:'>TRS</scene>, <scene name='pdbligand=ACY:'>ACY</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Site: <scene name='pdbsite=FSO:Hydrophobic+Channel+Xe+Binding+Site'>FSO</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E9V OCA].  
<StructureSection load='1e9v' size='340' side='right'caption='[[1e9v]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1e9v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E9V FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e9v OCA], [https://pdbe.org/1e9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e9v RCSB], [https://www.ebi.ac.uk/pdbsum/1e9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e9v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/HCP_NITV2 HCP_NITV2] Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.[HAMAP-Rule:MF_00069]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/1e9v_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1e9v ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Desulfovibrio vulgaris]]
[[Category: Desulfovibrio vulgaris]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Bailey, S.]]
[[Category: Bailey S]]
[[Category: Cooper, S.J.]]
[[Category: Cooper SJ]]
[[Category: Lindley, P.F.]]
[[Category: Lindley PF]]
[[Category: Rizkallah, P.J.]]
[[Category: Rizkallah PJ]]
[[Category: ACY]]
[[Category: EDO]]
[[Category: FSO]]
[[Category: GOL]]
[[Category: SF4]]
[[Category: TRS]]
[[Category: XE]]
[[Category: cubane]]
[[Category: fuscoredoxin]]
[[Category: hybrid cluster]]
[[Category: hydrophobic cavity]]
[[Category: iron sulfur]]
[[Category: prismane]]
[[Category: s-mercaptocysteine]]
[[Category: thiocysteine]]
[[Category: xenon]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb  3 09:38:38 2008''

Latest revision as of 11:24, 6 November 2024

XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARISXENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

Structural highlights

1e9v is a 1 chain structure with sequence from Desulfovibrio vulgaris. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.79Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HCP_NITV2 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.[HAMAP-Rule:MF_00069]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1e9v, resolution 1.79Å

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