1emk: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1emk.gif|left|200px]]
-<!--
+==GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT==
-The line below this paragraph, containing "STRUCTURE_1emk", creates the "Structure Box" on the page.
+<StructureSection load='1emk' size='340' side='right'caption='[[1emk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1emk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EMK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCY:2-(1-AMINO-2-MERCAPTO-ETHYL)-5-(4-HYDROXY-BENZYL)-3-(ETHANOYL)-3,5-DIHYDRO-IMIDAZOL-4-ONE'>CCY</scene></td></tr>
-{{STRUCTURE_1emk|  PDB=1emk  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1emk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emk OCA], [https://pdbe.org/1emk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1emk RCSB], [https://www.ebi.ac.uk/pdbsum/1emk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1emk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/em/1emk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1emk ConSurf].
+<div style="clear:both"></div>
-'''GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT'''
+==See Also==
+*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-EMK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMK OCA].
-==Reference==
-The structural basis for spectral variations in green fluorescent protein., Palm GJ, Zdanov A, Gaitanaris GA, Stauber R, Pavlakis GN, Wlodawer A, Nat Struct Biol. 1997 May;4(5):361-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9145105 9145105]
 [[Category: Aequorea victoria]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Palm, G.]]
+[[Category: Palm G]]
-[[Category: Wlodawer, A.]]
+[[Category: Wlodawer A]]
-[[Category: Zdanov, A.]]
+[[Category: Zdanov A]]
-[[Category: Beta-barrel]]
-[[Category: Bioluminescence]]
-[[Category: Fluorescent protein]]
-[[Category: Luminescence]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 15:16:57 2008''