2emo: Difference between revisions

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-[[Image:2emo.jpg|left|200px]]<br /><applet load="2emo" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2emo, resolution 2.6&Aring;" />
-'''GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT'''<br />
-==About this Structure==
+==GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT==
-EMO is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Known structural/functional Site: <scene name='pdbsite=CSH:The Chromophore (Csh) Is Formed From SER 65 - TYR 66 - G ...'>CSH</scene>. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2EMO OCA].
+<StructureSection load='2emo' size='340' side='right'caption='[[2emo]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2emo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EMO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EMO FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSH:[2-(2-HYDROXY-1-METHYL-ETHYL)-4-(1H-IMIDAZOL-4-YLMETHYL)-5-OXO-IMIDAZOLIDIN-1-YL]-ACETIC+ACID'>CSH</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2emo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2emo OCA], [https://pdbe.org/2emo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2emo RCSB], [https://www.ebi.ac.uk/pdbsum/2emo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2emo ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/em/2emo_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2emo ConSurf].
+<div style="clear:both"></div>
-==Reference==
+==See Also==
-The structural basis for spectral variations in green fluorescent protein., Palm GJ, Zdanov A, Gaitanaris GA, Stauber R, Pavlakis GN, Wlodawer A, Nat Struct Biol. 1997 May;4(5):361-5. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9145105 9145105]
+*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
+__TOC__
+</StructureSection>
 [[Category: Aequorea victoria]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Palm, G.]]
+[[Category: Palm G]]
-[[Category: Wlodawer, A.]]
+[[Category: Wlodawer A]]
-[[Category: Zdanov, A.]]
+[[Category: Zdanov A]]
-[[Category: beta-barrel]]
-[[Category: bioluminescence]]
-[[Category: fluorescent protein]]
-[[Category: luminescence]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Dec 18 19:32:11 2007''