2ccv: Difference between revisions

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OCA

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 ==Structure of Helix Pomatia agglutinin with zinc and N-acetyl-alpha-D- galactoseamine (GalNAc)==
-<StructureSection load='2ccv' size='340' side='right' caption='[[2ccv]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+<StructureSection load='2ccv' size='340' side='right'caption='[[2ccv]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2ccv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CCV FirstGlance]. <br>
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CCV FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ce6|2ce6]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ccv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ccv OCA], [http://pdbe.org/2ccv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ccv RCSB], [http://www.ebi.ac.uk/pdbsum/2ccv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ccv ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ccv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ccv OCA], [https://pdbe.org/2ccv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ccv RCSB], [https://www.ebi.ac.uk/pdbsum/2ccv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ccv ProSAT]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
@@ Line 13: / Line 13: @@
    <jmolCheckbox>
      <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/2ccv_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 29: / Line 29: @@
 ==See Also==
-*[[Agglutinin|Agglutinin]]
+*[[Agglutinin 3D structures|Agglutinin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Helix pomatia]]
+[[Category: Large Structures]]
-[[Category: Audfray, A]]
+[[Category: Audfray A]]
-[[Category: Breton, C]]
+[[Category: Breton C]]
-[[Category: Chazalet, V]]
+[[Category: Chazalet V]]
-[[Category: Gagnon, J]]
+[[Category: Gagnon J]]
-[[Category: Gautier, C]]
+[[Category: Gautier C]]
-[[Category: Imberty, A]]
+[[Category: Imberty A]]
-[[Category: Lescar, J]]
+[[Category: Lescar J]]
-[[Category: Mitchell, E P]]
+[[Category: Mitchell EP]]
-[[Category: Sanchez, J F]]
+[[Category: Sanchez J-F]]
-[[Category: Lectin]]
-[[Category: Snail]]