3c5p: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:3c5p.jpg|left|200px]]<br /><applet load="3c5p" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="3c5p, resolution 2.90&Aring;" />
-'''Crystal structure of BAS0735, a protein of unknown function from Bacillus anthracis str. Sterne'''<br />
-==About this Structure==
+==Crystal structure of BAS0735, a protein of unknown function from Bacillus anthracis str. Sterne==
-C5P is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._sterne Bacillus anthracis str. sterne] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+301'>AC1</scene>, <scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+B+302'>AC2</scene>, <scene name='pdbsite=AC3:Mg+Binding+Site+For+Residue+B+301'>AC3</scene>, <scene name='pdbsite=AC4:Mg+Binding+Site+For+Residue+C+302'>AC4</scene>, <scene name='pdbsite=AC5:Mg+Binding+Site+For+Residue+C+301'>AC5</scene>, <scene name='pdbsite=AC6:Mg+Binding+Site+For+Residue+D+302'>AC6</scene>, <scene name='pdbsite=AC7:Mg+Binding+Site+For+Residue+D+301'>AC7</scene>, <scene name='pdbsite=AC8:Mg+Binding+Site+For+Residue+F+302'>AC8</scene>, <scene name='pdbsite=AC9:Mg+Binding+Site+For+Residue+F+301'>AC9</scene>, <scene name='pdbsite=BC1:Mg+Binding+Site+For+Residue+E+302'>BC1</scene>, <scene name='pdbsite=BC2:Mg+Binding+Site+For+Residue+E+301'>BC2</scene> and <scene name='pdbsite=BC3:Mg+Binding+Site+For+Residue+A+302'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5P OCA].
+<StructureSection load='3c5p' size='340' side='right'caption='[[3c5p]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-[[Category: Bacillus anthracis str. sterne]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[3c5p]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._Sterne Bacillus anthracis str. Sterne]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5P FirstGlance]. <br>
-[[Category: Gornicki, P.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Joachimiak, G.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5p OCA], [https://pdbe.org/3c5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5p RCSB], [https://www.ebi.ac.uk/pdbsum/3c5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5p ProSAT], [https://www.topsan.org/Proteins/MCSG/3c5p TOPSAN]</span></td></tr>
-[[Category: Kim, Y.]]
+</table>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+== Function ==
-[[Category: MG]]
+[https://www.uniprot.org/uniprot/A0A4Y1WDA8_BACAN A0A4Y1WDA8_BACAN]
-[[Category: 2-layer beta-sheet]]
+== Evolutionary Conservation ==
-[[Category: mcsg]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: midwest center for structural genomics]]
+Check<jmol>
-[[Category: protein structure initiative]]
+  <jmolCheckbox>
-[[Category: psi-2]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5p_consurf.spt"</scriptWhenChecked>
-[[Category: structural genomics]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: unknown function]]
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:28 2008''
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c5p ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Bacillus anthracis str. Sterne]]
+[[Category: Large Structures]]
+[[Category: Gornicki P]]
+[[Category: Joachimiak A]]
+[[Category: Joachimiak G]]
+[[Category: Kim Y]]