3bjb: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:3bjb.png|left|200px]]
-<!--
+==Crystal structure of a TetR transcriptional regulator from Rhodococcus sp. RHA1==
-The line below this paragraph, containing "STRUCTURE_3bjb", creates the "Structure Box" on the page.
+<StructureSection load='3bjb' size='340' side='right'caption='[[3bjb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3bjb]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BJB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BJB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3bjb|  PDB=3bjb  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bjb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bjb OCA], [https://pdbe.org/3bjb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bjb RCSB], [https://www.ebi.ac.uk/pdbsum/3bjb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bjb ProSAT], [https://www.topsan.org/Proteins/MCSG/3bjb TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of a TetR transcriptional regulator from Rhodococcus sp. RHA1===
+== Function ==
+[https://www.uniprot.org/uniprot/Q0S4E5_RHOJR Q0S4E5_RHOJR]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-BJB is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodococcus_sp._rha1 Rhodococcus sp. rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BJB OCA].
+Check<jmol>
-[[Category: Rhodococcus sp. rha1]]
+  <jmolCheckbox>
-[[Category: Edwards, A M.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bj/3bjb_consurf.spt"</scriptWhenChecked>
-[[Category: Evdokimova, E.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Joachimiak, A.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Kudritska, M.]]
+  </jmolCheckbox>
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bjb ConSurf].
-[[Category: Savchenko, A.]]
+<div style="clear:both"></div>
-[[Category: Tan, K.]]
+__TOC__
-[[Category: Apc7331]]
+</StructureSection>
-[[Category: Dna-binding]]
+[[Category: Large Structures]]
-[[Category: Mcsg]]
+[[Category: Rhodococcus jostii RHA1]]
-[[Category: Midwest center for structural genomic]]
+[[Category: Edwards AM]]
-[[Category: Protein structure initiative]]
+[[Category: Evdokimova E]]
-[[Category: Psi-2]]
+[[Category: Joachimiak A]]
-[[Category: Rhodococcus sp. rha1]]
+[[Category: Kudritska M]]
-[[Category: Structural genomic]]
+[[Category: Savchenko A]]
-[[Category: Tetr]]
+[[Category: Tan K]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]
-[[Category: Transcription regulator]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:23:14 2008''